MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 is a Ligand Of Interest in 4YDD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4YDD_MD1_E_1004 | 68% | 5% | 0.152 | 0.963 | 3.76 | 1.76 | 11 | 10 | 0 | 0 | 100% | 1 |
| 4YDD_MD1_A_1004 | 64% | 3% | 0.17 | 0.969 | 4.09 | 1.95 | 10 | 13 | 2 | 0 | 100% | 1 |
| 4YDD_MD1_C_1004 | 61% | 4% | 0.174 | 0.965 | 4.28 | 1.61 | 10 | 10 | 1 | 0 | 100% | 1 |
| 5E7O_MD1_E_1004 | 86% | 3% | 0.101 | 0.971 | 4.72 | 1.73 | 11 | 7 | 1 | 0 | 100% | 1 |
| 5CH7_MD1_E_1004 | 76% | 4% | 0.142 | 0.98 | 3.73 | 1.93 | 11 | 13 | 1 | 0 | 100% | 1 |
| 5CHC_MD1_E_1004 | 71% | 4% | 0.159 | 0.98 | 3.98 | 1.95 | 14 | 10 | 2 | 0 | 100% | 1 |
| 2IVF_MD1_A_1987 | 98% | 7% | 0.06 | 0.983 | 2.53 | 2.41 | 6 | 13 | 2 | 1 | 100% | 1 |
| 1Y4Z_MD1_A_1800 | 91% | 4% | 0.084 | 0.971 | 3.64 | 2.08 | 8 | 9 | 1 | 0 | 100% | 1 |
| 1Y5L_MD1_A_1800 | 91% | 3% | 0.089 | 0.975 | 3.6 | 2.41 | 9 | 10 | 2 | 0 | 100% | 1 |
| 1Y5I_MD1_A_2800 | 90% | 4% | 0.081 | 0.963 | 3.49 | 2.34 | 11 | 12 | 2 | 0 | 100% | 1 |
| 3EGW_MD1_A_1245 | 86% | 3% | 0.094 | 0.962 | 3.58 | 2.37 | 9 | 10 | 1 | 0 | 100% | 1 |
