GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5CJ2 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5CJ2_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5CJ2_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5CJ2_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5CJ2_GDP_A_301 92% 40% 0.078 0.970.93 1.38 - 720100%1
5CJ2_GDP_C_301 92% 37% 0.082 0.9741.15 1.3 2 600100%1
5CJ2_GDP_B_301 92% 33% 0.087 0.9761.32 1.35 2 600100%1
5CJ2_GDP_E_301 90% 43% 0.085 0.9691.08 1.14 1 300100%1
5CJ2_GDP_F_301 90% 49% 0.093 0.9771 0.98 2 -10100%1
5CJ2_GDP_D_301 88% 32% 0.094 0.9691.39 1.33 4 520100%1
5CJ2_GDP_H_301 83% 42% 0.103 0.960.98 1.26 - 220100%1
5CJ2_GDP_G_301 76% 46% 0.111 0.9460.89 1.19 1 340100%1
3GJ0_GDP_A_302 99% 48% 0.061 0.9881 0.99 1 100100%1
5CIW_GDP_A_301 98% 40% 0.06 0.9830.85 1.48 - 300100%1
3GJ8_GDP_A_302 98% 48% 0.067 0.9870.94 1.08 1 300100%1
5CIQ_GDP_A_301 97% 41% 0.068 0.9831 1.29 1 400100%1
5CIT_GDP_A_301 95% 38% 0.073 0.9791.1 1.32 3 510100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1