GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5MI8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5MI8_GDP_A_403 | 84% | 60% | 0.084 | 0.951 | 0.59 | 0.77 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5MI8_GDP_B_403 | 76% | 64% | 0.09 | 0.929 | 0.68 | 0.54 | 1 | - | 0 | 0 | 100% | 1 |
| 5MI3_GDP_A_402 | 99% | 24% | 0.042 | 0.989 | 1.1 | 1.87 | 4 | 10 | 0 | 0 | 100% | 1 |
| 2HCJ_GDP_A_999 | 99% | 69% | 0.044 | 0.983 | 0.52 | 0.54 | - | 1 | 0 | 0 | 100% | 1 |
| 2HDN_GDP_J_5999 | 99% | 50% | 0.046 | 0.984 | 0.8 | 1.01 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3U6B_GDP_B_401 | 98% | 69% | 0.045 | 0.978 | 0.52 | 0.52 | - | - | 0 | 0 | 100% | 1 |
| 4P3Y_GDP_A_402 | 98% | 28% | 0.048 | 0.98 | 1.13 | 1.65 | 2 | 6 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
