D12: DODECANE

D12 is a Ligand Of Interest in 5NC5 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NC5_D12_A_1112Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NC5_D12_A_1112Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NC5_D12_A_1112Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5NC5_D12_A_1112 24% 73% 0.276 0.910.62 0.43 - -00100%1
5NC5_D12_C_1107 15% 72% 0.339 0.9010.79 0.29 - -00100%1
5NC5_D12_A_1103 11% 70% 0.383 0.90.5 0.65 - -00100%1
5NC5_D12_C_1103 6% 67% 0.326 0.7710.61 0.66 - -00100%1
5NC5_D12_B_1121 5% 74% 0.452 0.8810.69 0.33 - -1092%1
5NC5_D12_C_1106 4% 72% 0.474 0.860.39 0.7 - -00100%1
5NC5_D12_C_1108 3% 76% 0.426 0.8710.51 0.44 - -0042%1
5NC5_D12_B_1104 2% 77% 0.44 0.7940.5 0.43 - -0075%1
4DX5_D12_A_1111 49% 59% 0.128 0.8750.44 1.11 - -80100%1
6ZO6_D12_A_1112 48% 85% 0.141 0.8820.24 0.49 - -00100%1
5JMN_D12_B_1108 31% 86% 0.174 0.8440.3 0.42 - -00100%1
6ZOC_D12_A_1210 31% 82% 0.247 0.9190.24 0.55 - -10100%1
6ZO8_D12_C_1121 29% 85% 0.235 0.8960.28 0.46 - -00100%1
3UTY_D12_A_501 99% 67% 0.058 0.9880.22 1.03 - 100100%1
3UTX_D12_B_401 94% 12% 0.076 0.9771.73 2.32 2 500100%1
6W84_D12_A_404 75% 70% 0.118 0.9510.29 0.85 - -00100%1
4Y9H_D12_A_305 70% 83% 0.094 0.9090.26 0.52 - -00100%1
3HAS_D12_A_401 69% 0% 0.096 0.913.48 6.45 6 500100%1