Ligand validation:5VDH

IVM: (2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside

IVM is a Ligand Of Interest in 5VDH designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VDH_IVM_A_403	35%	24%	0.223	0.913	1.86	1.28	8	9	3	0	100%	1
5VDH_IVM_D_403	34%	23%	0.209	0.892	1.84	1.35	8	11	2	0	100%	1
5VDH_IVM_B_403	27%	23%	0.243	0.894	1.83	1.36	8	10	2	0	100%	1
5VDH_IVM_E_403	26%	24%	0.214	0.857	1.81	1.34	8	11	0	0	100%	1
5VDH_IVM_C_403	25%	22%	0.239	0.877	1.83	1.39	8	13	2	0	100%	1
5VDI_IVM_C_403	42%	16%	0.205	0.925	1.93	1.73	11	19	0	0	100%	1
4WVD_IVM_A_505	50%	4%	0.186	0.938	3.38	2.16	27	32	6	0	100%	1
3RI5_IVM_B_349	33%	38%	0.231	0.913	0.79	1.62	1	17	1	0	100%	1
3RIF_IVM_D_402	31%	37%	0.232	0.903	0.8	1.64	1	16	2	0	100%	1
3RIA_IVM_A_348	23%	37%	0.281	0.906	0.8	1.63	1	15	1	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.