6AVP | pdb_00006avp


ADP: ADENOSINE-5'-DIPHOSPHATE

ADP is a Ligand Of Interest in 6AVP designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6AVP_ADP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6AVP_ADP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6AVP_ADP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
6AVP_ADP_A_301 76% 37% 0.131 0.9681.02 1.44 2 400100%1
6AVP_ADP_B_301 74% 38% 0.127 0.9561.06 1.35 2 400100%1
6AVP_ADP_D_301 67% 41% 0.133 0.941.08 1.2 2 310100%1
6AVP_ADP_C_301 66% 35% 0.135 0.9391.15 1.39 2 500100%1
5JIC_ADP_A_302 99% 42% 0.053 0.9820.93 1.31 - 400100%1
6AWI_ADP_B_301 97% 25% 0.064 0.9811.31 1.73 2 200100%1
5ELZ_ADP_A_301 96% 41% 0.068 0.9791.01 1.29 1 300100%1
4M7Y_ADP_A_302 95% 39% 0.077 0.9791.08 1.3 2 200100%1
4M7X_ADP_A_301 94% 43% 0.065 0.9640.97 1.21 1 300100%1
3KB1_ADP_A_301 100% 22% 0.021 0.9962.06 1.21 6 410100%1
3TW6_ADP_B_2000 100% 44% 0.019 0.9970.83 1.34 - 430100%1
5GZA_ADP_A_401 100% 2% 0.019 0.9973.36 3.39 13 1110100%1
5KHW_ADP_A_1201 100% 41% 0.023 0.9951.1 1.2 1 200100%1
8VZA_ADP_A_603 100% 37% 0.024 0.9950.96 1.51 1 500100%1