Ligand validation:8PD1

DMS: DIMETHYL SULFOXIDE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
8PD1_DMS_A_506	67%	93%	0.121	0.933	0.3	0.16	-	-	0	0	100%	1
8PD1_DMS_B_501	60%	88%	0.146	0.934	0.31	0.29	-	-	0	0	100%	1
8PD1_DMS_A_502	60%	91%	0.139	0.925	0.33	0.17	-	-	0	0	100%	1
8PD1_DMS_B_507	51%	94%	0.146	0.901	0.28	0.15	-	-	0	0	100%	1
8PD1_DMS_A_504	29%	98%	0.196	0.861	0.25	0.05	-	-	1	0	100%	1
8PD1_DMS_A_501	24%	97%	0.193	0.826	0.24	0.08	-	-	0	0	100%	1
8PD1_DMS_B_508	13%	97%	0.188	0.74	0.29	0.04	-	-	0	0	100%	1
8PD1_DMS_A_507	8%	95%	0.22	0.703	0.31	0.07	-	-	0	0	100%	1
8PJ0_DMS_C_514	99%	92%	0.041	0.994	0.24	0.23	-	-	2	0	100%	1
5SNN_DMS_A_501	99%	94%	0.047	0.994	0.29	0.12	-	-	0	0	100%	1
8CN4_DMS_B_505	98%	89%	0.057	0.987	0.34	0.25	-	-	0	0	100%	1
5SO0_DMS_A_502	98%	93%	0.057	0.986	0.21	0.23	-	-	0	0	100%	1
5SN6_DMS_A_502	97%	91%	0.06	0.986	0.3	0.21	-	-	0	0	100%	1
8DZ9_DMS_B_402	100%	94%	0.017	0.998	0.21	0.21	-	-	1	0	100%	1
4LAW_DMS_B_301	100%	17%	0.019	0.999	2.83	0.76	1	-	4	0	100%	1
6TOV_DMS_A_102	100%	85%	0.021	0.999	0.32	0.35	-	-	0	0	100%	1
7GBE_DMS_A_1002	100%	67%	0.023	0.997	0.6	0.52	-	-	0	0	100%	1
7G81_DMS_A_203	100%	73%	0.025	0.998	0.58	0.35	-	-	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.