5BT

5-bromo-2'-deoxycytidine

Created:2011-01-25
Last modified:  2020-06-05

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Chemical Details

Formal Charge0
Atom Count29
Chiral Atom Count3
Bond Count30
Aromatic Bond Count0
2D diagram of 5BT

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Chemical Component Summary

Name5-bromo-2'-deoxycytidine
Synonyms5-bromo-2'-doxy-D-cytidine
Systematic Name (OpenEye OEToolkits)4-azanyl-5-bromo-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
FormulaC9 H12 Br N3 O4
Molecular Weight306.113
TypeNON-POLYMER

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)CO)N
SMILESCACTVS3.370NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO)O2
SMILESOpenEye OEToolkits1.7.0C1C(C(OC1N2C=C(C(=NC2=O)N)Br)CO)O
Canonical SMILESCACTVS3.370 NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO)O2
Canonical SMILESOpenEye OEToolkits1.7.0 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)CO)O
InChIInChI1.03 InChI=1S/C9H12BrN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1
InChIKeyInChI1.03 KISUPFXQEHWGAR-RRKCRQDMSA-N

Related Resource References

Resource NameReference
PubChem 472175
ChEMBL CHEMBL386413
CCDC/CSD BAFPAZ, CALDEY