5HM

5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)

Created:2014-01-22
Last modified:  2020-06-05

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Chemical Details

Formal Charge0
Atom Count39
Chiral Atom Count4
Bond Count40
Aromatic Bond Count0
2D diagram of 5HM

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Chemical Component Summary

Name5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)
Synonyms5-hydroxymethylcytidine 5'-monophosphate
Systematic Name (OpenEye OEToolkits)[(2R,3S,4R,5R)-5-[4-azanyl-5-(hydroxymethyl)-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
FormulaC10 H16 N3 O9 P
Molecular Weight353.223
TypeRNA LINKING

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(=C1)CO)C(O)C2O
SMILESCACTVS3.385NC1=NC(=O)N(C=C1CO)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
SMILESOpenEye OEToolkits1.7.6C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)CO
Canonical SMILESCACTVS3.385 NC1=NC(=O)N(C=C1CO)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
Canonical SMILESOpenEye OEToolkits1.7.6 C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)CO
InChIInChI1.03 InChI=1S/C10H16N3O9P/c11-8-4(2-14)1-13(10(17)12-8)9-7(16)6(15)5(22-9)3-21-23(18,19)20/h1,5-7,9,14-16H,2-3H2,(H2,11,12,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1
InChIKeyInChI1.03 KPUOHXMVCZBWQC-JXOAFFINSA-N

Related Resource References

Resource NameReference
PubChem 68655403