CDM

4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL

Created:	2001-05-22
Last modified:	2011-06-04

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7 entries where CDM is found as a standalone ligand

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Chemical Details
Formal Charge	0
Atom Count	58
Chiral Atom Count	8
Bond Count	59
Aromatic Bond Count	0

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Chemical Component Summary
Name	4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL
Systematic Name (OpenEye OEToolkits)	[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[(2R,3S)-2,3,4-trihydroxy-3-methyl-butoxy]phosphoryl] hydrogen phosphate
Formula	C₁₄ H₂₅ N₃ O₁₄ P₂
Molecular Weight	521.308
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=P(O)(OCC(O)C(O)(C)CO)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2O
SMILES	CACTVS	3.341	C[C](O)(CO)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N
SMILES	OpenEye OEToolkits	1.5.0	CC(CO)(C(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=NC2=O)N)O)O)O)O
Canonical SMILES	CACTVS	3.341	C[C@](O)(CO)[C@H](O)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N
Canonical SMILES	OpenEye OEToolkits	1.5.0	C[C@](CO)([C@@H](CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O)O)O
InChI	InChI	1.03	InChI=1S/C14H25N3O14P2/c1-14(23,6-18)8(19)5-29-33(26,27)31-32(24,25)28-4-7-10(20)11(21)12(30-7)17-3-2-9(15)16-13(17)22/h2-3,7-8,10-12,18-21,23H,4-6H2,1H3,(H,24,25)(H,26,27)(H2,15,16,22)/t7-,8-,10-,11-,12-,14+/m1/s1
InChIKey	InChI	1.03	YFAUKWZNPVBCFF-XHIBXCGHSA-N

Drug Info: DrugBank

DrugBank ID	DB03687
Name	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
Groups	experimental
Synonyms	4-Diphosphocytidyl-2-C-methyl-D-erythritol 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol 4-CDP-2-C-methyl-D-erythritol
CAS number	263016-94-0

Drug Targets

Name	Target Sequence	Pharmacological Action
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLG...	unknown
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGD...	unknown
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPR...	unknown

Drug Info/Drug Targets: DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Nucleic Acids Res. 2011 Jan; 39 (Database issue):D1035-41. | PMID:21059682