CLY

CLINDAMYCIN

Created:	2001-09-18
Last modified:	2011-06-04

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6 entries where CLY is found as a standalone ligand

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Chemical Details
Formal Charge	0
Atom Count	60
Chiral Atom Count	9
Bond Count	61
Aromatic Bond Count	0

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Chemical Component Summary
Name	CLINDAMYCIN
Systematic Name (OpenEye OEToolkits)	(1R,2S,4R)-N-[(1S,2S)-2-chloro-1-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methylsulfanyl-oxan-2-yl]propyl]-1-methyl-4-propyl-pyrrolidine-2-carboxamide
Formula	C₁₈ H₃₃ Cl N₂ O₅ S
Molecular Weight	424.983
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	ClC(C)C(NC(=O)C1N(C)CC(CCC)C1)C2OC(SC)C(O)C(O)C2O
SMILES	CACTVS	3.341	CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH](C)Cl)[CH]2O[CH](SC)[CH](O)[CH](O)[CH]2O
SMILES	OpenEye OEToolkits	1.5.0	CCCC1CC(N(C1)C)C(=O)NC(C2C(C(C(C(O2)SC)O)O)O)C(C)Cl
Canonical SMILES	CACTVS	3.341	CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@H]([C@H](C)Cl)[C@H]2O[C@H](SC)[C@H](O)[C@@H](O)[C@H]2O
Canonical SMILES	OpenEye OEToolkits	1.5.0	CCC[C@@H]1C[C@H]([N@@](C1)C)C(=O)N[C@@H]([C@@H]2[C@@H]([C@@H]([C@H]([C@H](O2)SC)O)O)O)[C@H](C)Cl
InChI	InChI	1.03	InChI=1S/C18H33ClN2O5S/c1-5-6-10-7-11(21(3)8-10)17(25)20-12(9(2)19)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,22-24H,5-8H2,1-4H3,(H,20,25)/t9-,10+,11-,12+,13-,14+,15+,16+,18+/m0/s1
InChIKey	InChI	1.03	KDLRVYVGXIQJDK-AWPVFWJPSA-N

Drug Info: DrugBank

DrugBank ID	DB01190
Name	Clindamycin
Groups	approved vet_approved
Description	Clindamycin is a semi-synthetic lincosamide antibiotic used in the treatment of a variety of serious infections due to susceptible microorganisms[L11599,L11596] as well as topically for acne vulgaris.[L11593] It has a relatively narrow spectrum of activity that includes anaerobic bacteria as well as gram-positive cocci and bacilli and gram-negative bacilli.[A190621] Interestingly, clindamycin appears to carry some activity against protozoans, and has been used off-label in the treatment of toxoplasmosis, malaria, and babesiosis.[A190657] Clindamycin is derived from, and has largely replaced, [lincomycin], a naturally occurring lincosamide and the eponymous member of this antibiotic class, due to its improved properties over the parent compound. The name lincomycin is derived from Lincoln, Nebraska, where it was first isolated from _Streptomyces lincolnensis_ found in a soil sample.[A190621]
Synonyms	Clindamicina Clindamycin hydrochloride 7(S)-Chloro-7-deoxylincomycin Clindamycine Clindamycin phosphate Clindamycin palmitate hydrochloride Methyl 7-chloro-6,7,8-trideoxy-6-(1-methyl-trans-4-propyl-L-2-pyrrolidinecarboxamido)-1-thio-L-threo-alpha-D-galacto-octopyranoside Clindamycinum 7-CDL Clindamycin
Brand Names	Clindamycin Phosphate and Tretinoin Gel 1.2%/0.025% Clindamycine-300 Clindamycin Phosphate and Benzoyl Peroxide Clindagel Teva-clindamycin Clindamycin 1% / Niacinamide 4% / Tretinoin 0.05% CLIN-LIDO-Single Use Kit CLIN-Single Use Kit Taro-benzoyl Peroxide / Clindamycin Kit Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 2% / Spironolactone 2% Riva-clindamycin Cleocin T Ratio-clindamycin Capsules - 300mg Benzoyl Peroxide 2.5%, Clindamycin Phosphate 1%, Niacinamide 2% / Tretinoin 0.05% Biacna Topical Gel Ava-clindamycin NuCaraRXPAK Clindamycin Phoaphate Topical USP, 1% Clindamycin - Benzoyl Peroxide Clindamycin Phosphate M-clindamycin Apo-clindamycin Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 4% Clindamycin Phoaphate Topical Solution USP, 1% Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 2% / Spironolactone 2% / Tretinoin 0.025% Clindamycin Injection In 5% Dextrose Benzoyl Peroxide 2.5% / Clindamycin 1% / Niacinamide 4% Jamp Clindamycin Med-clindamycin Clindamycin in 5 percent Dextrose Duac Clindamycin IV Infusion Clindamycin and Benzoyl Peroxide Clindoxyl Gel Clindamycin Phosphate and Benzoyl Peroxide Clindamycin Phosphate and Benzoyl Peroxide Truemed Group LLC Clinda-Derm Clindamycin Hydrochloride Dalacin C Flavoured Granules Clindamycin Phosphate Topical Solution USP, 1% Dalacin C 300 mg Clindamycin 1% / Niacinamide 4% / Tretinoin 0.025% Clindavix Nra-clindamycin Veltin PMS-clindamycin Ziana Clindamycin Phosphate and Tretinoin Clindamycin Palmitate Hydrochloride (pediatric) Clindap-T Priva-clindamycin Clindasol Clindamycin Phosphate and Tretinion Adapalene 0.3% / Benzoyl Peroxide 2.5% / Clindamycin 1% CLINDAMYCIN PALMITATE HYDROCHLORIDE (Pediatric) Cabtreo Clindamycin Phosphate Injection USP Liq Clindamax Clindamycin Injection USP Dalacin C Phosphate Clindamycin 1% / Niacinamide 2% / Tazarotene 0.05% Clindets Nu-clindamycin Cleocin ClindaMax Imiquimod 5% / Levocetirizine Dihydrochloride 1% / Tretinoin 0.05% Clindamycin Benzoyl Peroxide 5% / Clindamycin1% / Niacinamide 2% / Tretinoin 0.025% Clindamycin Phoaphate Topical Solution, 1% Taro-clindamycin/benzoyl Peroxide Gel Dalacin Vaginal Cream Clindamycin 1% / Niacinamide 4% Dalacin T 1% Clindacin PAC Clindamycin HCL Onexton Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 2% / Spironolactone 2% / Tretinoin 0.05% Clindamycin Palmitate Hydrochloride Clindamycin phosphate Cleocin Phosphate Clindamycin Phosphate 1.2% and Tretinoin 0.025% Acanya Xaciato Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 2% / Tretinoin 0.05% Auro-clindamycin Adapalene 0.1% / Benzoyl Peroxide 2.5% / Clindamycin 1% Clindamycin Injection, USP Benzoyl Peroxide 2.5% / Clindamycin 1% / Niacinamide 2% / Tretinoin 0.025% Ratio-clindamycin Capsules-150mg Clindamycin hydrochloride Acnil Clindacin P Clindamycin 1% / Niacinamide 4% / Spironolactone 2% / Tretinoin 0.025% Cleocin Phosphate (0009-6582) (standalone) Clindesse ClindaReach Cleocin Hydrochloride Benzaclin NuCaraClinPAK Dalacin C 150 mg Clindamycin 1% / Hydrocortisone 2.5% / Niacinamide 4% Clindamycine-150 Neuac Kit Neuac Clindacin Ag-clindamycin Clindamycin Phosphate Topical Solution USP Clindamycin in 5 Percent Dextrose Mylan-clindamycin Taro-clindamycin Evoclin Clindamycin Palmitate Hydrochloride (Pediatric) Clindacin ETZ Clindamycin phosphate and benzoyl peroxide Clinda-T Clindamycin 1% / Sodium Sulfacetamide Monohydrate 5% / Tretinoin 0.025% Clindamycin Injection Sdz Benzoyl Peroxide 5% / Clindamycin 1% / Niacinamide 2% / Tretinoin 0.1% Cleocin Pediatric Clindoxyl Adv Gel
Indication	In oral and parenteral formulations, clindamycin is indicated for the treatment of serious infections caused by susceptible anaerobic bacteria, as well as susceptible staphylococci, streptococci, and pneumococci.[L11599,L11602] Used topically, it is indicated for the treatment of acne vulgaris[L11593,L11611,L11605] and is available in combination with [benzoyl peroxide][L11584] or [tretinoin][L11590] for this purpose, or as a triple combination therapy with benzoyl peroxide and [adapalene].[L48666] Clindamycin is also indicated as a vaginal cream[L11596], suppository[L11608], or gel[L39416] for the treatment of bacterial vaginosis in non-pregnant females. Clindamycin is used for antimicrobial prophylaxis against _Viridans_ group streptococcal infections in susceptible patients undergoing oral, dental, or upper respiratory surgery, and may be used for prophylaxis against bacterial endocarditis in penicillin-allergic patients at high risk of these infections.[L11629]
Categories	Agents that produce neuromuscular block (indirect) Anti-Acne Preparations Anti-Acne Preparations for Topical Use Anti-Bacterial Agents Anti-Infective Agents Antibacterials for Systemic Use Antibiotics for Pneumocystis Pneumonia Antiinfectives for Systemic Use Antiinfectives for Treatment of Acne Cytochrome P-450 CYP3A Inhibitors Cytochrome P-450 CYP3A Substrates Cytochrome P-450 CYP3A4 Inhibitors Cytochrome P-450 CYP3A4 Inhibitors (moderate) Cytochrome P-450 CYP3A4 Substrates Cytochrome P-450 CYP3A5 Substrates Cytochrome P-450 Enzyme Inhibitors Cytochrome P-450 Substrates Decreased Sebaceous Gland Activity Dermatologicals Enzyme Inhibitors Genito Urinary System and Sex Hormones Glycosides Gynecological Antiinfectives and Antiseptics Lincomycins Lincosamide Antibacterial Lincosamides Macrolides Macrolides, Lincosamides and Streptogramins Neuromuscular Blockade Neurotoxic agents P-glycoprotein substrates Protein Synthesis Inhibitors Pyrrolidines
ATC-Code	D10AF01 J01FF01 D10AF51 G01AA10
CAS number	18323-44-9

Drug Targets

Name	Target Sequence	Pharmacological Action	Actions
50S ribosomal protein L1	MAKKGKKYQEAASKVDRTQHYSVEEAIKLAKETSIANFDASVEVAFRLGI...	unknown	inhibitor
Cytochrome P450 3A5	MDLIPNLAVETWLLLAVSLVLLYLYGTRTHGLFKRLGIPGPTPLPLLGNV...	unknown	substrate
Cytochrome P450 3A4	MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNI...	unknown	substrate,inhibitor
Alpha-1-acid glycoprotein 1	MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAF...	unknown	substrate
ATP-dependent translocase ABCB1	MDLEGDRNGGAKKKNFFKLNNKSEKDKKEKKPTVSVFSMFRYSNWLDKLY...	unknown	substrate

Drug Info/Drug Targets: DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Nucleic Acids Res. 2011 Jan; 39 (Database issue):D1035-41. | PMID:21059682