CTN

4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE

Created: 2003-05-20
Last modified:  2021-03-01

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Chemical Details

Formal Charge0
Atom Count30
Chiral Atom Count4
Bond Count31
Aromatic Bond Count6
2D diagram of CTN

Chemical Component Summary

Name4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE
SynonymsCYTIDINE
Systematic Name (OpenEye OEToolkits)4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
FormulaC9 H13 N3 O5
Molecular Weight243.217
TypeNON-POLYMER

Chemical Descriptors

TypeProgram Version Descriptor
SMILESACDLabs10.04O=C1N=C(N)C=CN1C2OC(C(O)C2O)CO
SMILESCACTVS3.341NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2O
SMILESOpenEye OEToolkits1.5.0C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)O
Canonical SMILESCACTVS3.341 NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O
Canonical SMILESOpenEye OEToolkits1.5.0 C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
InChIInChI1.03 InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKeyInChI1.03 UHDGCWIWMRVCDJ-XVFCMESISA-N

Drug Info: DrugBank

DrugBank IDDB02097 
NameCytidine
Groups experimental
Synonyms
  • Cytosine riboside
  • Citidina
  • Cytidin
  • 1-beta-D-Ribofuranosylcytosine
  • 4-amino-1β-D-ribofuranosyl-2(1H)-pyrimidinone
Categories
  • Nucleic Acids, Nucleotides, and Nucleosides
  • Nucleosides
  • Pyrimidine Nucleosides
  • Pyrimidines
  • Ribonucleosides
CAS number65-46-3

Drug Targets

NameTarget SequencePharmacological ActionActions
Uridine-cytidine kinase 2MAGDSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVD...unknown
Drug Info/Drug Targets: DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Nucleic Acids Res. 2011 Jan; 39 (Database issue):D1035-41. | PMID:21059682

Related Resource References

Resource NameReference
PubChem 6175
ChEMBL CHEMBL95606
ChEBI CHEBI:17562
CCDC/CSD CYTIDI01, CYTIDI11, YIDKIF, CYTIDI12, CYTIDI02, CYTIDI10
COD 2001311, 2300371