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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kasinath, V."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (25)
	Xenopus laevis (5)
	Anolis carolinensis (4)
	synthetic construct (4)
	Mus musculus (1)

Taxonomy

	Eukaryota (26)
	other sequences (4)

Experimental Method

	ELECTRON MICROSCOPY (15)
	X-RAY DIFFRACTION (11)

Polymer Entity Type

	Protein (26)
	DNA (6)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (7)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (9)
	2020 - 2024 (9)
	2025 - 2029 (5)

Enzyme Classification Name

Transferases (26)

Symmetry Type

	Asymmetric (23)
	Cyclic (3)

AllSelected

1 to 25 of 26 Structures

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2QXV \| pdb_00002qxv	Download File View File

Structural basis of EZH2 recognition by EED

Han, Z.

(2007) Structure 15: 1306-1315

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Mus musculus
Macromolecule	Embryonic ectoderm development (protein) Enhancer of zeste homolog 2 (protein)

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4MI0 \| pdb_00004mi0	Download File View File

Human Enhancer of Zeste (Drosophila) Homolog 2(EZH2)

Dong, A., Zeng, H., He, H., Wernimont, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., Structural Genomics Consortium (SGC)

(2013) PLoS One 8: e83737-e83737

Released	2013-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2 (protein)
Unique Ligands	UNX, ZN

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4MI5 \| pdb_00004mi5	Download File View File

Crystal structure of the EZH2 SET domain

Antonysamy, S., Condon, B., Druzina, Z., Bonanno, J., Gheyi, T., Macewan, I., Zhang, A., Ashok, S., Russell, M., Luz, J.G.

(2013) PLoS One 8: e84147-e84147

Released	2014-01-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2 (protein)
Unique Ligands	SO4, ZN

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4W2R \| pdb_00004w2r	Download File View File

Structure of Hs/AcPRC2 in complex with 5,8-dichloro-2-[(4-methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-7-[(R)-methoxy(oxetan-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one

Gajiwala, K.S., Brooun, A., Liu, W., Deng, Y., Stewart, A.E.

(2018) J Med Chem 61: 650-665

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of zeste 2 polycomb repressive complex 2 subunit (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	CJD, ZN

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5HYN \| pdb_00005hyn	Download File View File

Structure of Human Polycomb Repressive Complex 2 (PRC2) with oncogenic histone H3K27M peptide

Zhang, Y., Justin, N., Wilson, J.R., Gamblin, S.J.

(2016) Nat Commun 7: 11316-11316

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	H3K27M (protein) Histone-lysine N-methyltransferase EZH2 (protein) JARID2 K116me3 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	SAH, ZN

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5IJ7 \| pdb_00005ij7	Download File View File

Structure of Hs/AcPRC2 in complex with a pyridone inhibitor

Gajiwala, K.S., Brooun, A., Deng, Y.-L., Liu, W.

(2016) Nat Commun 7: 11384-11384

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of Zeste Homolog 2 (EZH2),Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	6BN, ZN

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5IJ8 \| pdb_00005ij8	Download File View File

Structure of the primary oncogenic mutant Y641N Hs/AcPRC2 in complex with a pyridone inhibitor

Gajiwala, K.S., Brooun, A., Deng, Y.-L., Liu, W.

(2016) Nat Commun 7: 11384-11384

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of Zeste Homolog 2 (EZH2),Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	6BN, ZN

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5LS6 \| pdb_00005ls6	Download File View File

Structure of Human Polycomb Repressive Complex 2 (PRC2) with inhibitor

Zhang, Y., Justin, N., Chen, S., Wilson, J., Gamblin, S.

(2016) J Med Chem 59: 9928-9941

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.47 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2 (protein) Jarid2 K116me3 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	74D, ZN

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5WG6 \| pdb_00005wg6	Download File View File

Human Polycomb Repressive Complex 2 in complex with GSK126 inhibitor

Bratkowski, M.A., Liu, X.

(2018) Sci Rep 8: 9092-9092

Released	2018-06-27
Method	X-RAY DIFFRACTION 3.901 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2,Polycomb protein SUZ12 (E.C.2.1.1.43) chimera (protein) Polycomb protein EED (protein)
Unique Ligands	A9G, ZN

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6B3W \| pdb_00006b3w	Download File View File

Structure of Hs/AcPRC2 in complex with 5,8-dichloro-7-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[(4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one

Gajiwala, K.S., Brooun, A., Liu, W., Deng, Y., Stewart, A.E.

(2018) J Med Chem 61: 650-665

Released	2017-12-27
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of zeste 2 polycomb repressive complex 2 subunit,Enhancer of zeste 2 polycomb repressive complex 2 subunit (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	CJG, ZN

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6C23 \| pdb_00006c23	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6C24 \| pdb_00006c24	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6U4Y \| pdb_00006u4y	Download File View File

Crystal Structure of an EZH2-EED Complex in an Oligomeric State

Jiao, L., Liu, X.

(2020) Proc Natl Acad Sci U S A 117: 16992-17002

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein)

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6WKR \| pdb_00006wkr	Download File View File

PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome

Kasinath, V., Nogales, E., Beck, C., Sauer, P., Poepsel, S., Kosmatka, J., Faini, M., Toso, D., Aebersold, R.

(2021) Science 371:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 1
Unique Ligands	MG, SAH, ZN

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7AT8 \| pdb_00007at8	Download File View File

Histone H3 recognition by nucleosome-bound PRC2 subunit EZH2.

Finogenova, K., Benda, C., Schaefer, I.B., Poepsel, S., Strauss, M., Mueller, J.

(2020) Elife 9:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	SAH, ZN

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8EQV \| pdb_00008eqv	Download File View File

Cryo-EM structure of PRC2 in complex with the long isoform of AEBP2

Boudes, M., Zhang, Q., Flanigan, S.F., Davidovich, C.

To be published

Released	2024-07-31
Method	ELECTRON MICROSCOPY 3.64 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein) Zinc finger protein AEBP2 (protein)

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8FYH \| pdb_00008fyh	Download File View File

G4 RNA-mediated PRC2 dimer

Song, J., Kasinath, V.

(2023) Science 381: 1331-1337

Released	2023-10-04
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1
Unique Ligands	ZN

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8T9G \| pdb_00008t9g	Download File View File

Automethylated PRC2 dimer bound to nucleosome

Sauer, P.V., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8TAS \| pdb_00008tas	Download File View File

PRC2 monomer bound to nucleosome

Sauer, P.V., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8TB9 \| pdb_00008tb9	Download File View File

PRC2-J119-450 monomer bound to H1-nucleosome

Sauer, P.V., Cookis, T., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8VMI \| pdb_00008vmi	Download File View File

PRC2_AJ119-450 bound to H3K4me3

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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8VML \| pdb_00008vml	Download File View File

PRC2_AJ1-450 bound to H3K4me3

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7

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8VNV \| pdb_00008vnv	Download File View File

PRC2_AJ1-450 bound to H3K36me3 with histone H3 tail engaged

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-22
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	SAH