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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bui, K.H."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (7)
	Homo sapiens (5)
	Bacillus licheniformis (3)
	Mycobacterium tuberculosis CDC1551 (3)
	Arabidopsis thaliana (2)
	Mycobacterium tuberculosis H37Ra (2)
	Mycobacterium tuberculosis H37Rv (2)
	Betapolyomavirus macacae (1)
	Gallus gallus (1)
	Mycolicibacterium smegmatis MC2 155 (1)

More...

Taxonomy

	Bacteria (19)
	Eukaryota (8)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	SOLUTION NMR (2)
	SOLID-STATE NMR (1)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (7)
	2015 - 2019 (11)
	2020 - 2024 (2)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (14)
	Hydrolases (4)
	Isomerases (3)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (10)
	Dihedral (2)
	Helical (1)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a+b) (3)
	Alpha and beta proteins (a/b) (3)
	All alpha proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 27 Structures

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1DPU \| pdb_00001dpu	Download File View File

SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN RPA32 COMPLEXED WITH UNG2(73-88)

Mer, G., Edwards, A.M., Chazin, W.J.

(2000) Cell 103: 449-456

Released	2000-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	REPLICATION PROTEIN A (RPA32) C-TERMINAL DOMAIN (protein) URACIL DNA GLYCOSYLASE (UNG2) (protein)

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1U79 \| pdb_00001u79	Download File View File

Crystal structure of AtFKBP13

Gopalan, G., Swaminathan, K.

(2004) Proc Natl Acad Sci U S A 101: 13945-13950

Released	2004-09-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Arabidopsis thaliana
Macromolecule	FKBP-type peptidyl-prolyl cis-trans isomerase 3 (protein)

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1Y0O \| pdb_00001y0o	Download File View File

crystal structure of reduced AtFKBP13

Gayathri, G., Swaminathan, K.

To be published

Released	2005-11-01
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Arabidopsis thaliana
Macromolecule	FKBP-type peptidyl-prolyl cis-trans isomerase 3 (protein)

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1Z1D \| pdb_00001z1d	Download File View File

Structural Model for the interaction between RPA32 C-terminal domain and SV40 T antigen origin binding domain.

Arunkumar, A.I., Klimovich, V., Jiang, X., Ott, R.D., Mizoue, L., Fanning, E., Chazin, W.J.

(2005) Nat Struct Mol Biol 12: 332-339

Released	2005-05-17
Method	SOLUTION NMR
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Large T antigen (protein) Replication protein A 32 kDa subunit (protein)

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2LPZ \| pdb_00002lpz	Download File View File

Atomic model of the Type-III Secretion System Needle

Loquet, A., Sgourakis, N.G., Gupta, R., Giller, K., Riedel, D., Goosmann, C., Griesinger, C., Kolbe, M.G., Baker, D., Becker, S., Lange, A.

(2012) Nature 486: 276-279

Released	2012-05-16
Method	SOLID-STATE NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Protein prgI (protein)

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3E53 \| pdb_00003e53	Download File View File

Crystal structure of N-terminal domain of a Fatty Acyl AMP Ligase FAAL28 from Mycobacterium tuberculosis

Goyal, A., Rajakumara, E., Yousuf, M., Sankaranarayanan, R.

(2009) Nat Chem Biol 5: 166-173

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	FATTY-ACID-CoA LIGASE FADD28 (protein)

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3TUR \| pdb_00003tur	Download File View File

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 complexed with a peptidoglycan fragment

Bianchet, M.A., Erdemli, S.B., Gupta, R., Lamichhane, G., Amzel, L.M.

(2012) Structure 20: 2103-2115

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Mycobacteria Tuberculosis LD-transpeptidase type 2 (protein)
Unique Ligands	0JC, 6CL, DGL, PT

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3TX4 \| pdb_00003tx4	Download File View File

Crystal Structure of Mutant (C354A) M. tuberculosis LD-transpeptidase type 2

Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

(2012) Structure 20: 2103-2115

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Mycobacterium Tuberculosis LD-transpeptidase type 2 (protein)

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3U1P \| pdb_00003u1p	Download File View File

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 with Modified Catalytic Cysteine (C354)

Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

(2012) Structure 20: 2103-2115

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Mycobacteria Tuberculosis LD-transpeptidase type 2 (protein)
Unique Ligands	PEG

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3U1Q \| pdb_00003u1q	Download File View File

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 with 2-Mercaptoethanol

Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

To be published

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Mycobacteria Tuberculosis LD-transpeptidase type 2 (protein)
Unique Ligands	BME, PEG

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3VAE \| pdb_00003vae	Download File View File

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 with Modified Catalytic Cysteine (C354)

Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

(2012) Structure 20: 2103-2115

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	LD-transpeptidase type 2 (protein)
Unique Ligands	PEG

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4NQW \| pdb_00004nqw	Download File View File

Structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigK in complex with the cytosolic domain of its cognate anti-sigma factor RskA

Shukla, J.K., Gopal, B.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1026-1036

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Anti-sigma-K factor RskA (protein) ECF RNA polymerase sigma factor SigK (protein)
Unique Ligands	CD

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4Z0M \| pdb_00004z0m	Download File View File

EchA5 Mycobacterium tuberculosis

Chaudhary, S., Gokhale, R.S.

(2015) Chem Biol 22: 1577-1587

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-CoA hydratase (protein)

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4Z7A \| pdb_00004z7a	Download File View File

Structural and biochemical characterization of a non-functionally redundant M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5.

Basta, L., Ghosh, A., Pan, Y., Jakoncic, J., Lloyd, E., Townsend, G., Lamichhane, G., Bianchet, M.A.

(2015) J Biological Chem 290: 25670-25685

Released	2015-09-02
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Mycobacterium tuberculosis (3,3)L,D-Transpeptidase type 5 (protein)
Unique Ligands	ACE, PEG, PGE, PO4

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4ZFQ \| pdb_00004zfq	Download File View File

Structure of M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5. (Meropenen-adduct form)

Basta, L., Ghosh, A., Lamichhane, G., Bianchet, M.A.

(2015) J Biological Chem 290: 25670-25685

Released	2015-09-02
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	L,D-transpeptidase 5 (protein)
Unique Ligands	DWZ, PEG

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5DC2 \| pdb_00005dc2	Download File View File

X-RAY CRYSTAL STRUCTURE OF A ENZYMATICALLY DEGRADED BIAPENEM-ADDUCT OF L,D-TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS

Pan, Y., Basta, L., Lamichhane, G., Bianchet, M.A.

(2017) BMC Biochem 18: 8-8

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.182 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	58U, EDO, GOL, PEG, PGE, SO4

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5DCC \| pdb_00005dcc	Download File View File

X-RAY CRYSTAL STRUCTURE OF a TEBIPENEM ADDUCT OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS

Pan, Y., Basta, L., Lamichhane, G., Bianchet, M.A.

(2017) BMC Biochem 18: 8-8

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.451 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	58U, EDO, GOL, PEG, PGE, SO4

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5E0N \| pdb_00005e0n	Download File View File

Crystal Structure of MSMEG_3139, a monofunctional enoyl CoA isomerase from M.smegmatis

Priyadarshan, K., Haque, A.S., Anandakrishnan, M., Sankaranarayanan, R.

(2015) Chem Biol 22: 1577-1587

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.061 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Enoyl-CoA hydratase/isomerase (protein)

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5XLU \| pdb_00005xlu	Download File View File

High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin

Kumari, S., Goel, M., Gupta, R., Pal, R.

To be published

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Bacillus licheniformis
Macromolecule	Gamma glutamyl transpeptidase (protein)
Unique Ligands	AVN, CA, GOL

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5Y8X \| pdb_00005y8x	Download File View File

Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine

Kumari, S., Goel, M., Pal, R., Gupta, R.

To be published

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Bacillus licheniformis
Macromolecule	Gamma glutamyl transpeptidase (protein)
Unique Ligands	AZS, CA, EDO, GOL

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5Y9B \| pdb_00005y9b	Download File View File

Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with DON

Goel, M., Kumari, S., Pal, R., Gupta, R.

To be published

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus licheniformis
Macromolecule	Gamma glutamyl transpeptidase (protein)
Unique Ligands	CA, DON, EDO

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6BOI \| pdb_00006boi	Download File View File

Crystal Structure of LdtMt2 (56-408) with a panipenem adduct at the active site cysteine-354

Saavedra, H., Bianchet, M.A.

To be published

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Putative conserved lipoprotein LppS (protein)
Unique Ligands	E0Y, GOL, PEG, SO4

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6BUV \| pdb_00006buv	Download File View File

Structure of Mycobacterium tuberculosis NadD in complex with inhibitor [(1~{R},2~{R},5~{S})-5-methyl-2-propan-2-yl-cyclohexyl] 2-[3-methyl-2-(phenoxymethyl)benzimidazol-1-yl]ethanoate

Rodionova, I.A., Reed, R.W., Sorci, L., Osterman, A.L., Korotkov, K.V.

(2019) ACS Chem Biol 14: 949-958

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	nicotinate mononucleotide adenylyltransferase NadD (protein)
Unique Ligands	CL, E9A, NA

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6X88 \| pdb_00006x88	Download File View File

PDE6 chicken GAF domain

Ke, H.

(2020) J Mol Biology 432: 5765-5783

Released	2020-11-04
Method	X-RAY DIFFRACTION 3.19974462757 Å
Organisms	Gallus gallus
Macromolecule	Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' (protein)

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7R8U \| pdb_00007r8u	Download File View File

LOX-1 - Structural and Functional Studies of a Receptor Implicated in Atherosclerosis

Oganesyan, V., van Dyk, N.

(2023) Commun Med

Released	2022-06-01
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Homo sapiens
Macromolecule	Antibody light chain, kappa (protein) Antigen binding fragment, Vh and Ch1 (protein) Oxidized low-density lipoprotein receptor 1 (protein)
Unique Ligands	GOL

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DPU | pdb_00001dpu

1U79 | pdb_00001u79

1Y0O | pdb_00001y0o

1Z1D | pdb_00001z1d

2LPZ | pdb_00002lpz

3E53 | pdb_00003e53

3TUR | pdb_00003tur

3TX4 | pdb_00003tx4

3U1P | pdb_00003u1p

3U1Q | pdb_00003u1q

3VAE | pdb_00003vae

4NQW | pdb_00004nqw

4Z0M | pdb_00004z0m

4Z7A | pdb_00004z7a

4ZFQ | pdb_00004zfq

5DC2 | pdb_00005dc2

5DCC | pdb_00005dcc

5E0N | pdb_00005e0n

5XLU | pdb_00005xlu

5Y8X | pdb_00005y8x

5Y9B | pdb_00005y9b

6BOI | pdb_00006boi

6BUV | pdb_00006buv

6X88 | pdb_00006x88

7R8U | pdb_00007r8u