Download MendeleyCrystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine
Goel, M., Kumari, S., Gupta, R.To be published.
5Y8X
Crystal structure of Bacillus licheniformis Gamma glutamyl transpeptidase with Azaserine
- PDB DOI: https://doi.org/10.2210/pdb5Y8X/pdb
- Classification: TRANSFERASE
- Organism(s): Bacillus licheniformis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-08-21 Released: 2018-10-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.194
- R-Value Work: 0.143
- R-Value Observed: 0.146
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gamma glutamyl transpeptidase | 398 | Bacillus licheniformis | Mutation(s): 0 EC: 2.3.2.2 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gamma glutamyl transpeptidase | 187 | Bacillus licheniformis | Mutation(s): 0 EC: 2.3.2.2 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AZS Query on AZS | I [auth B] | O-DIAZOACETYL-L-SERINE C5 H7 N3 O4 MZZGOOYMKKIOOX-VKHMYHEASA-N |  | ||
| GOL Query on GOL | D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], F [auth B], G [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.194
- R-Value Work: 0.143
- R-Value Observed: 0.146
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.164 | α = 90 |
| b = 60.016 | β = 100.42 |
| c = 74.781 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2018-10-17 Deposition Author(s): Kumari, S., Goel, M., Pal, R., Gupta, R.
Revision History (Full details and data files)
- Version 1.0: 2018-10-17
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description
