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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Friend, D."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (7)
	synthetic construct (5)
	Monosiga brevicollis (2)
	unidentified (1)

Taxonomy

	Eukaryota (8)
	other sequences (5)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	> 4.5 (1)

Release Date

	2010 - 2014 (6)
	2020 - 2024 (5)

Symmetry Type

	Asymmetric (9)
	Cyclic (4)

SCOP Classification

	All beta proteins (4)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 11 of 11 Structures

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4LLV \| pdb_00004llv	Download File View File

The structure of the unbound form of anti-HIV antibody 4E10 Fv

Finton, K.A.K., Rupert, P.B., Strong, R.K.

(2013) PLoS Pathog 9: e1003639-e1003639

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	4E10 Fv heavy chain (protein) 4E10 Fv light chain (protein)
Unique Ligands	GOL, SO4

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4LRN \| pdb_00004lrn	Download File View File

Ontogeny of recognition specificity and functionality for the anti-HIV antibody 4E10

Finton, K.A.K.

(2014) PLoS Pathog 10: e1004403-e1004403

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	GEP 1 heavy chain (protein) GEP 1 light chain (protein)

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4M62 \| pdb_00004m62	Download File View File

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

Finton, K.A.K.

(2014) PLoS Pathog 10: e1004403-e1004403

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	GEP2 FV heavy chain (protein) GEP2 FV light chain (protein) T117 (protein)
Unique Ligands	SO4

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4M8Q \| pdb_00004m8q	Download File View File

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

Finton, K.A.K.

(2014) PLoS Pathog 10: e1004403-e1004403

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4E10 epitope scaffold T117 (protein) GEP1 Fv heavy chain (protein) GEP1 Fv light chain (protein)

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4OB5 \| pdb_00004ob5	Download File View File

Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10

Jaffe, J.B., Rupert, P.B.

(2014) PLoS Pathog 10: e1004403-e1004403

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	4E10 antibody germline precursor 7 heavy chain Fv (protein) 4E10 antibody germline precursor 7 light chain Fv (protein)
Unique Ligands	GOL, TMO

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4ODX \| pdb_00004odx	Download File View File

4E10 germline encoded precursor no.7 in complex with epitope scaffold T117

Finton, K.A.K.

(2014) PLoS Pathog 10: e1004403-e1004403

Released	2014-10-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	4E10 epitope scaffold T117 (protein) GEP7 Fv heavy chain (protein) GEP7 Fv light chain (protein)

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6OKD \| pdb_00006okd	Download File View File

Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide

Finton, K.A.K., Rupert, P.B., Strong, R.K.

(2020) J Mol Biology 432: 3989-4009

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Monosiga brevicollis
Macromolecule	Transferrin receptor protein 1 (protein) transferrin receptor binding cystine-dense peptide (protein)
Unique Ligands	GOL, MES, NAG

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6OKE \| pdb_00006oke	Download File View File

Crystal structure of an apo Transferrin-Receptor-Binding cystine-dense peptide

Rupert, P.B., Strong, R.K.

(2020) J Mol Biology 432: 3989-4009

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Monosiga brevicollis
Macromolecule	Transferrin-Receptor Binding Peptide (protein)

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6XR1 \| pdb_00006xr1	Download File View File

Computationally designed right-handed alpha/alpha single-chain toroid with 9 repeats

Hallinan, J.P., Doyle, L., Bradley, P., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	dTor_9x57R (protein)

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6XR2 \| pdb_00006xr2	Download File View File

Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit

Hallinan, J.P., Doyle, L., Bradley, P., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-07-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	synthetic construct
Macromolecule	dTor_3x57R (protein)

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7RDR \| pdb_00007rdr	Download File View File

Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces

Shen, B.W., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-09-01
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	unidentified
Macromolecule	Circular tendon repeat protein (protein)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4LLV | pdb_00004llv

The structure of the unbound form of anti-HIV antibody 4E10 Fv

4LRN | pdb_00004lrn

Ontogeny of recognition specificity and functionality for the anti-HIV antibody 4E10

4M62 | pdb_00004m62

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

4M8Q | pdb_00004m8q

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

4OB5 | pdb_00004ob5

Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10

4ODX | pdb_00004odx

4E10 germline encoded precursor no.7 in complex with epitope scaffold T117

6OKD | pdb_00006okd

Crystal Structure of human transferrin receptor in complex with a cystine-dense peptide

6OKE | pdb_00006oke

Crystal structure of an apo Transferrin-Receptor-Binding cystine-dense peptide

6XR1 | pdb_00006xr1

Computationally designed right-handed alpha/alpha single-chain toroid with 9 repeats

6XR2 | pdb_00006xr2

Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit

7RDR | pdb_00007rdr

Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

4LLV | pdb_00004llv

4LRN | pdb_00004lrn

4M62 | pdb_00004m62

4M8Q | pdb_00004m8q

4OB5 | pdb_00004ob5

4ODX | pdb_00004odx

6OKD | pdb_00006okd

6OKE | pdb_00006oke

6XR1 | pdb_00006xr1

6XR2 | pdb_00006xr2

7RDR | pdb_00007rdr