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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Godoy, A.S."

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Search Summary

This query matches 1,302 Structures.

Refinements

Structure Determination Methodology

experimental (1,302)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (611)
	Coxsackievirus A16 (285)
	Zika virus (142)
	Chikungunya virus (133)
	enterovirus D68 (104)
	Bifidobacterium bifidum S17 (3)
	Homo sapiens (3)
	Xanthomonas campestris pv. campestris (3)
	Bacillus licheniformis (2)
	Coxsackievirus B3 (2)

More...

Taxonomy

	Riboviria (1,283)
	Eukaryota (10)
	Bacteria (9)

Experimental Method

	X-RAY DIFFRACTION (1,293)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (1,302)

Refinement Resolution (Å)

	1.0 - 1.5 (518)
	1.5 - 2.0 (641)
	2.0 - 2.5 (122)
	2.5 - 3.0 (17)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (7)
	2020 - 2024 (1,055)
	2025 - 2029 (239)

Enzyme Classification Name

	Hydrolases (1,280)
	Transferases (4)
	Translocases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (1)
	OPM (1)

Symmetry Type

	Asymmetric (775)
	Cyclic (492)
	Dihedral (35)

SCOP Classification

	Alpha and beta proteins (a/b) (44)
	Artifacts (31)
	Alpha and beta proteins (a+b) (26)
	All beta proteins (11)
	Small proteins (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 1,302 Structures

Page 1 of 53

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4BCR \| pdb_00004bcr	Download File View File

Structure of PPARalpha in complex with WY14643

Bernardes, A., Muniz, J.R.C., Polikarpov, I.

(2013) J Mol Biology 425: 2878

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.497 Å
Organisms	Homo sapiens
Macromolecule	PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA (protein)
Unique Ligands	EDO, WY1

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4UCF \| pdb_00004ucf	Download File View File

Crystal structure of Bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose

Godoy, A.S., Murakami, M.T., Camilo, C.M., Bernardes, A., Polikarpov, I.

(2016) FEBS J 283: 4097

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bifidobacterium bifidum S17
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	GLA, PEG, POL

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4UZS \| pdb_00004uzs	Download File View File

Crystal structure of Bifidobacterium bifidum beta-galactosidase

Godoy, A.S., Murakami, M.T., Camilo, C.M., Bernardes, A., Polikarpov, I.

(2016) FEBS J 283: 4097

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Bifidobacterium bifidum S17
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	GOL, P6G, PEG, POL

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5FLW \| pdb_00005flw	Download File View File

Crystal structure of putative exo-beta-1,3-galactanase from Bifidobacterium bifidum s17

Godoy, A.S., de Lima, M.Z.T., Ramia, M.P., Camilo, C.M., Muniz, J.R.C., Polikarpov, I.

(2016) Acta Crystallogr F Struct Biol Commun 72: 288-293

Released	2015-12-23
Method	X-RAY DIFFRACTION 1.401 Å
Organisms	Bifidobacterium bifidum S17
Macromolecule	EXO-BETA-1,3-GALACTANASE (protein)
Unique Ligands	BTB

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5KJO \| pdb_00005kjo	Download File View File

X-ray structure of PcCel45A expressed in Aspergillus nidullans

Godoy, A.S., Ramia, M.P., Camilo, C.M., Polikarpov, I.

To be published

Released	2017-06-21
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Endoglucanase V-like protein (protein)
Unique Ligands	EDO

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5KJQ \| pdb_00005kjq	Download File View File

X-ray structure of PcCel45A in complex with cellobiose expressed in Aspergillus nidullans

Godoy, A.S., Ramia, M.P., Camilo, C.M., Polikarpov, I.

(2018) Sci Rep 8: 3678-3678

Released	2017-06-21
Method	X-RAY DIFFRACTION 1.704 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Endoglucanase V-like protein (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC

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5RHG \| pdb_00005rhg	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z235341991

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, NY7, PO4

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5RHH \| pdb_00005rhh	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1515654336

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UQJ

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5RHI \| pdb_00005rhi	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z198194396

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, K2M, MPD, PO4

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5RHJ \| pdb_00005rhj	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z126932614

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, T6J

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5RHK \| pdb_00005rhk	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z87615031

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UQM

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5RHL \| pdb_00005rhl	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z425387594

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, H04, MPD, PO4

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5RHM \| pdb_00005rhm	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1454310449

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UQS

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5RHO \| pdb_00005rho	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1444783243

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UQV

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5RHP \| pdb_00005rhp	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z2856434938

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	7ZC, EDO, MPD, PO4

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5RHQ \| pdb_00005rhq	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z235449082

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, JFS, MPD, PO4

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5RHR \| pdb_00005rhr	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1348559502

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UQY

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5RHS \| pdb_00005rhs	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z274555794

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, NZ4, PO4

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5RHT \| pdb_00005rht	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z291279160

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, LV4, MPD, PO4

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5RHU \| pdb_00005rhu	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1703168683

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UR7

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5RHV \| pdb_00005rhv	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z62645406

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UR4

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5RHW \| pdb_00005rhw	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z31222641

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, GV1, MPD, PO4

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5RHX \| pdb_00005rhx	Download File View File

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1324080698

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4, UR1

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5RHY \| pdb_00005rhy	Download File View File

PanDDA analysis group deposition of ground-state model of Zika Virus NS3 Helicase

Godoy, A.S., Mesquita, N.C.M.R., Oliva, G.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Zika virus
Macromolecule	NS3 Helicase (protein)
Unique Ligands	EDO, MPD, PO4

Explore in 3D

5S6X \| pdb_00005s6x	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with Z2889976755

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUG

1 to 25 of 1,302 Structures

Page 1 of 53

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4BCR | pdb_00004bcr

4UCF | pdb_00004ucf

4UZS | pdb_00004uzs

5FLW | pdb_00005flw

5KJO | pdb_00005kjo

5KJQ | pdb_00005kjq

5RHG | pdb_00005rhg

5RHH | pdb_00005rhh

5RHI | pdb_00005rhi

5RHJ | pdb_00005rhj

5RHK | pdb_00005rhk

5RHL | pdb_00005rhl

5RHM | pdb_00005rhm

5RHO | pdb_00005rho

5RHP | pdb_00005rhp

5RHQ | pdb_00005rhq

5RHR | pdb_00005rhr

5RHS | pdb_00005rhs

5RHT | pdb_00005rht

5RHU | pdb_00005rhu

5RHV | pdb_00005rhv

5RHW | pdb_00005rhw

5RHX | pdb_00005rhx

5RHY | pdb_00005rhy

5S6X | pdb_00005s6x