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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hallinan, J.P."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	synthetic construct (18)
	Sordaria macrospora k-hell (2)
	Cryphonectria parasitica (1)
	Gremmeniella abietina (1)
	Grosmannia penicillata (1)
	Podospora anserina S mat+ (1)
	unidentified (1)

Taxonomy

	other sequences (18)
	Eukaryota (6)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (19)
	DNA (16)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)
	3.0 - 3.5 (5)
	> 4.5 (1)

Release Date

	2015 - 2019 (16)
	2020 - 2024 (3)

Symmetry Type

	Asymmetric (17)
	Cyclic (2)

AllSelected

1 to 19 of 19 Structures

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4YHX \| pdb_00004yhx	Download File View File

Crystal Structure of LAGLIDADG Meganuclease I-GpeMI Bound to Uncleaved DNA

Hallinan, J.P., Kaiser, B.K., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Grosmannia penicillata synthetic construct
Macromolecule	Ribosomal protein 3/homing endonuclease-like fusion protein (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA

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4YIS \| pdb_00004yis	Download File View File

Crystal Structure of LAGLIDADG Meganuclease I-CpaMI Bound to Uncleaved DNA

Hallinan, J.P., Kaiser, B.K., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Cryphonectria parasitica synthetic construct
Macromolecule	Meganuclease I-CpaMI (protein) DNA (28-MER) (nucleic acid)
Unique Ligands	CA, EDO

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4YIT \| pdb_00004yit	Download File View File

Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA

Hallinan, J.P., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-23
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Gremmeniella abietina synthetic construct
Macromolecule	Meganuclease I-AabMI (protein) DNA (25-MER) (nucleic acid) DNA (25MER) (nucleic acid)
Unique Ligands	CA

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4Z1Z \| pdb_00004z1z	Download File View File

Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four

Hallinan, J.P., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-30
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Sordaria macrospora k-hell synthetic construct
Macromolecule	Meganuclease I-SmaMI (protein) DNA (28-MER) (nucleic acid)
Unique Ligands	CA, GOL

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4Z20 \| pdb_00004z20	Download File View File

Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTGT Central Four

Hallinan, J.P., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-30
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Sordaria macrospora k-hell synthetic construct
Macromolecule	MEGANUCLEASE I-SMAMI (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA, GOL

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5ESP \| pdb_00005esp	Download File View File

Crystal Structure of LAGLIDADG Meganuclease I-PanMI with coordinated Calcium ions

Hallinan, J.P., Stoddard, B.L.

(2016) Structure 24: 862-873

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.995 Å
Organisms	Podospora anserina S mat+ synthetic construct
Macromolecule	I-PanMI (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA, GOL

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5T2H \| pdb_00005t2h	Download File View File

Engineered variant of I-OnuI meganuclease targeting the Human TCRa gene; harbors 43 point mutations relative to wild-type I-OnuI

Stoddard, B.L., Werther, R.

(2017) Nucleic Acids Res 45: 8621-8634

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.517 Å
Organisms	synthetic construct
Macromolecule	I-OnuI_e-hTCRa (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA

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5T2N \| pdb_00005t2n	Download File View File

Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP007280 gene; harbors 38 point mutations relative to wild-type I-OnuI

Stoddard, B.L., Werther, R.

(2017) Nucleic Acids Res 45: 8621-8634

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.079 Å
Organisms	synthetic construct
Macromolecule	I-OnuI_e-ag007820 (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA

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5T2O \| pdb_00005t2o	Download File View File

Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP011377 gene; harbors 53 point mutations relative to wild-type I-OnuI

Stoddard, B.L., Werther, R.

(2017) Nucleic Acids Res 45: 8621-8634

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.801 Å
Organisms	synthetic construct
Macromolecule	I-OnuI_e-ag011377 (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA

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5THG \| pdb_00005thg	Download File View File

Engineered variant of I-OnuI meganuclease targeting the HIV CCR5 gene; harbors 43 point mutations relative to wild-type I-OnuI

Hallinan, J.P., Stoddard, B.L.

To be published

Released	2017-05-03
Method	X-RAY DIFFRACTION 3.106 Å
Organisms	synthetic construct
Macromolecule	I-OnuI_e-hCCR5 (protein) DNA (29-MER) (nucleic acid)
Unique Ligands	CA, GOL

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6UVW \| pdb_00006uvw	Download File View File

Engineered variant of I-OnuI meganuclease with improved thermostability

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.551 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA

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6UW0 \| pdb_00006uw0	Download File View File

Engineered variant of I-OnuI meganuclease with improved thermostability and fully altered specificity targeting cholera toxin A subunit

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm-bCtxA (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA, EDO

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6UWG \| pdb_00006uwg	Download File View File

Engineered variant of I-OnuI meganuclease with improved thermostability and E178D mutation at catalytic site

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm-E178D (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA, EDO

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6UWH \| pdb_00006uwh	Download File View File

Intermediate engineered variant of I-OnuI meganuclease with improved thermostability and partially altered specificity

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.299 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm-hChr11v1 (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	CA, EDO

Explore in 3D

6UWJ \| pdb_00006uwj	Download File View File

Intermediate engineered variant of I-OnuI meganuclease with improved thermostability and partially altered specificity

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 1.852 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm-hChr11v2 (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA

Explore in 3D

6UWK \| pdb_00006uwk	Download File View File

Engineered variant of I-OnuI meganuclease with improved stability and fully altered specificity targeting human chromosome 11 trans integration site

Werther, R., Stoddard, B.L.

(2020) Structure 28: 760-775.e8

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.533 Å
Organisms	synthetic construct
Macromolecule	I-OnuI-e-Therm-hChr11v3 (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	CA, EDO

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6XR1 \| pdb_00006xr1	Download File View File

Computationally designed right-handed alpha/alpha single-chain toroid with 9 repeats

Hallinan, J.P., Doyle, L., Bradley, P., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	dTor_9x57R (protein)

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6XR2 \| pdb_00006xr2	Download File View File

Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit

Hallinan, J.P., Doyle, L., Bradley, P., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-07-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	synthetic construct
Macromolecule	dTor_3x57R (protein)

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7RDR \| pdb_00007rdr	Download File View File

Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces

Shen, B.W., Stoddard, B.L.

(2021) Commun Biol 4: 1240-1240

Released	2021-09-01
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	unidentified
Macromolecule	Circular tendon repeat protein (protein)

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4YHX | pdb_00004yhx

Crystal Structure of LAGLIDADG Meganuclease I-GpeMI Bound to Uncleaved DNA

4YIS | pdb_00004yis

Crystal Structure of LAGLIDADG Meganuclease I-CpaMI Bound to Uncleaved DNA

4YIT | pdb_00004yit

Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA

4Z1Z | pdb_00004z1z

Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four

4Z20 | pdb_00004z20

Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTGT Central Four

5ESP | pdb_00005esp

Crystal Structure of LAGLIDADG Meganuclease I-PanMI with coordinated Calcium ions

5T2H | pdb_00005t2h

Engineered variant of I-OnuI meganuclease targeting the Human TCRa gene; harbors 43 point mutations relative to wild-type I-OnuI

5T2N | pdb_00005t2n

Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP007280 gene; harbors 38 point mutations relative to wild-type I-OnuI

5T2O | pdb_00005t2o

Engineered variant of I-OnuI meganuclease targeting the Anopheles AGAP011377 gene; harbors 53 point mutations relative to wild-type I-OnuI

5THG | pdb_00005thg

Engineered variant of I-OnuI meganuclease targeting the HIV CCR5 gene; harbors 43 point mutations relative to wild-type I-OnuI

6UVW | pdb_00006uvw

Engineered variant of I-OnuI meganuclease with improved thermostability

6UW0 | pdb_00006uw0

Engineered variant of I-OnuI meganuclease with improved thermostability and fully altered specificity targeting cholera toxin A subunit

6UWG | pdb_00006uwg

Engineered variant of I-OnuI meganuclease with improved thermostability and E178D mutation at catalytic site

6UWH | pdb_00006uwh

Intermediate engineered variant of I-OnuI meganuclease with improved thermostability and partially altered specificity

6UWJ | pdb_00006uwj

Intermediate engineered variant of I-OnuI meganuclease with improved thermostability and partially altered specificity

6UWK | pdb_00006uwk

Engineered variant of I-OnuI meganuclease with improved stability and fully altered specificity targeting human chromosome 11 trans integration site

6XR1 | pdb_00006xr1

Computationally designed right-handed alpha/alpha single-chain toroid with 9 repeats

6XR2 | pdb_00006xr2

Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit

7RDR | pdb_00007rdr

Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

4YHX | pdb_00004yhx

4YIS | pdb_00004yis

4YIT | pdb_00004yit

4Z1Z | pdb_00004z1z

4Z20 | pdb_00004z20

5ESP | pdb_00005esp

5T2H | pdb_00005t2h

5T2N | pdb_00005t2n

5T2O | pdb_00005t2o

5THG | pdb_00005thg

6UVW | pdb_00006uvw

6UW0 | pdb_00006uw0

6UWG | pdb_00006uwg

6UWH | pdb_00006uwh

6UWJ | pdb_00006uwj

6UWK | pdb_00006uwk

6XR1 | pdb_00006xr1

6XR2 | pdb_00006xr2

7RDR | pdb_00007rdr