RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Law, J.A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Agrobacterium tumefaciens (19)
	Agrobacterium fabrum str. C58 (8)
	Allorhizobium ampelinum S4 (6)

Taxonomy

Bacteria (33)

Experimental Method

X-RAY DIFFRACTION (33)

Polymer Entity Type

	Protein (33)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (12)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (28)

Symmetry Type

	Asymmetric (28)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 25 of 33 Structures

Page 1 of 2

Sort by

Explore in 3D

6EPY \| pdb_00006epy	Download File View File

Structure of the PBP MelB (Atu4661) in complex with raffinose from A.fabrum C58

Morera, S., Vigouroux, A.

(2018) J Biological Chem 293: 7930-7941

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Periplasmic alpha-galactoside-binding protein (protein)
Unique Ligands	CA, EDO
Unique branched monosaccharides	FRU, GLA, GLC

Explore in 3D

6EPZ \| pdb_00006epz	Download File View File

Structure of the periplasmic binding protein MelB (Atu4661) in complex with melibiose from Agrobacterium fabrum C58

Vigouroux, A., Morera, S.

(2018) J Biological Chem 293: 7930-7941

Released	2018-04-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Periplasmic alpha-galactoside-binding protein (protein)
Unique Ligands	CL, EDO, MG, NA, PEG
Unique branched monosaccharides	GLA, GLC

Explore in 3D

6EQ0 \| pdb_00006eq0	Download File View File

Structure of the periplasmic binding protein (PBP) MelB (atu4661) in complex with galactose from agrobacterium tumefacien C58

Vigouroux, A., Morera, S.

(2018) J Biological Chem 293: 7930-7941

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Periplasmic alpha-galactoside-binding protein (protein)
Unique Ligands	CA, CL, EDO, GLA, PEG

Explore in 3D

6EQ1 \| pdb_00006eq1	Download File View File

Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with stachyose from agrobacterium fabrum C58

Vigouroux, A., Morera, S.

(2018) J Biological Chem 293: 7930-7941

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Periplasmic alpha-galactoside-binding protein (protein)
Unique Ligands	CA, EDO, PEG, PG4
Unique branched monosaccharides	FRU, GAL, GLC

Explore in 3D

6EQ8 \| pdb_00006eq8	Download File View File

Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with galactinol from agrobacterium fabrum C58

Vigouroux, A., Morera, S.

(2018) J Biological Chem 293: 7930-7941

Released	2018-04-18
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Periplasmic alpha-galactoside-binding protein (protein)
Unique Ligands	BQZ, CA, CL, EDO, P4G, PEG, PG4

Explore in 3D

6TFQ \| pdb_00006tfq	Download File View File

Structure in P3212 form of the PBP/SBP MoaA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	CL, GLC, N72, SO4

Explore in 3D

6TFS \| pdb_00006tfs	Download File View File

Structure in P3212 form of the PBP/SBP MoaA in complex with glucopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	CL, N7T, SO4

Explore in 3D

6TFX \| pdb_00006tfx	Download File View File

Structure in P21 form of the PBP/SBP MoaA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	EDO, MG, N72, PEG

Explore in 3D

6TG2 \| pdb_00006tg2	Download File View File

Structure of the PBP/SBP MotA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Marty, L.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	MotA (protein)
Unique Ligands	CA, EDO, N72, PEG

Explore in 3D

6TG3 \| pdb_00006tg3	Download File View File

Crystal Structure of the PBP/SBP MotA in complex with glucopinic acid from A. tumefaciens B6/R10

Morera, S., Vigouroux, S.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	MotA (protein)
Unique Ligands	EDO, N7T

Explore in 3D

6Z74 \| pdb_00006z74	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum

Morera, S., Vigouroux, V.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	CIT, EDO, GOL, NA, PEG, SO4, ZN

Explore in 3D

6ZA0 \| pdb_00006za0	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum (P21212 space group)

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	CIT, EDO, PEG, ZN

Explore in 3D

6ZA3 \| pdb_00006za3	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (C2221 space group)

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein) DNA (5'-D(APTPGPTPAPTPAPCPAPT)-3') (nucleic acid)
Unique Ligands	ACT, CL, EDO, PG4, ZN

Explore in 3D

6ZA7 \| pdb_00006za7	Download File View File

Structure of the apo transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	GOL, PEG, SO4, ZN

Explore in 3D

6ZAB \| pdb_00006zab	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (P6422 space group)

Morera, S., Naretto, A., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein) DNA (5'-D(APTPGPTPAPTPAPCPAPT)-3') (nucleic acid)
Unique Ligands	CIT, EDO, PEG, ZN

Explore in 3D

8C6R \| pdb_00008c6r	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.884 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, PEG, PGE

Explore in 3D

8C6U \| pdb_00008c6u	Download File View File

PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.843 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ACT, EDO, PEG

Explore in 3D

8C6W \| pdb_00008c6w	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 1

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)

Explore in 3D

8C6Y \| pdb_00008c6y	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 2

Morera, S., Vigouroux, A., legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO

Explore in 3D

8C75 \| pdb_00008c75	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 3

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.673 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, NA, PEG, PGE

Explore in 3D

8CAW \| pdb_00008caw	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with agrocin84

Morera, S., Vigouroux, A., El Sahili, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.256 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	C84, EDO, UKU

Explore in 3D

8CAY \| pdb_00008cay	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Siragu, S.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.626 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	NA, PEG, Y45, Y4H

Explore in 3D

8CB9 \| pdb_00008cb9	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with D-Glucose-2-phosphate

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX

Explore in 3D

8CDO \| pdb_00008cdo	Download File View File

PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX, EDO, PEG, PG4, PGE
Unique branched monosaccharides	FRU, GLC

Explore in 3D

8CH1 \| pdb_00008ch1	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine A

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, LAO, PEG, VDF
Unique branched monosaccharides	FRU, GLC

1 to 25 of 33 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

6EPY | pdb_00006epy

6EPZ | pdb_00006epz

6EQ0 | pdb_00006eq0

6EQ1 | pdb_00006eq1

6EQ8 | pdb_00006eq8

6TFQ | pdb_00006tfq

6TFS | pdb_00006tfs

6TFX | pdb_00006tfx

6TG2 | pdb_00006tg2

6TG3 | pdb_00006tg3

6Z74 | pdb_00006z74

6ZA0 | pdb_00006za0

6ZA3 | pdb_00006za3

6ZA7 | pdb_00006za7

6ZAB | pdb_00006zab

8C6R | pdb_00008c6r

8C6U | pdb_00008c6u

8C6W | pdb_00008c6w

8C6Y | pdb_00008c6y

8C75 | pdb_00008c75

8CAW | pdb_00008caw

8CAY | pdb_00008cay

8CB9 | pdb_00008cb9

8CDO | pdb_00008cdo

8CH1 | pdb_00008ch1