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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Polyak, S.W."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (28)
	Staphylococcus aureus A9781 (6)
	Staphylococcus aureus subsp. aureus ECT-R 2 (4)
	Staphylococcus aureus (3)
	Homo sapiens (2)
	Mycobacterium tuberculosis H37Ra (1)
	Staphylococcus aureus subsp. aureus Mu50 (1)

Taxonomy

	Bacteria (43)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (45)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (27)
	2.5 - 3.0 (10)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (16)
	2020 - 2024 (19)

Enzyme Classification Name

	Ligases (37)
	Hydrolases (1)

Symmetry Type

	Cyclic (39)
	Asymmetric (6)

SCOP Classification

	All alpha proteins (1)
	All beta proteins (1)

AllSelected

1 to 25 of 45 Structures

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3RKW \| pdb_00003rkw	Download File View File

Structural characterisation of staphylococcus aureus biotin protein ligase

Wilce, M.C.J., Pendini, N.R., Yap, M.Y.

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus subsp. aureus ECT-R 2
Macromolecule	Biotin-[acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	BT5

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3RKX \| pdb_00003rkx	Download File View File

Structural characterisation of staphylococcus aureus biotin protein ligase

Wilce, M.C.J.

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus subsp. aureus ECT-R 2
Macromolecule	Biotin-[acetyl-CoA-carboxylase] ligase (protein)

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3RKY \| pdb_00003rky	Download File View File

Structural characterisation of staphylococcus aureus biotin protein ligase

Wilce, M.C.J.

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 3.232 Å
Organisms	Staphylococcus aureus subsp. aureus ECT-R 2
Macromolecule	Biotin-[acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	BTN

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3V7C \| pdb_00003v7c	Download File View File

Cystal structure of SaBPL in complex with inhibitor

Yap, M.Y., Pendini, N.R.

(2012) J Biological Chem 287: 17823-17832

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)
Unique Ligands	C77

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3V7R \| pdb_00003v7r	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor

Yap, M.Y., Pendini, N.R.

(2012) J Biological Chem 287: 17823-17832

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)
Unique Ligands	32G

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3V7S \| pdb_00003v7s	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor 0364

Yap, M.Y., Pendini, N.R.

(2012) J Biological Chem 287: 17823-17832

Released	2012-04-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)
Unique Ligands	36F

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3V8J \| pdb_00003v8j	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase

Pendini, N.R., Yap, M.Y.

(2012) J Biological Chem 287: 17823-17832

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)

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3V8K \| pdb_00003v8k	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotin

Yap, M.Y., Pendini, N.R.

(2012) J Biological Chem 287: 17823-17832

Released	2012-12-26
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)
Unique Ligands	BTN

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3V8L \| pdb_00003v8l	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotinyl-5'-AMP

Yap, M.Y.

(2012) J Biological Chem 287: 17823-17832

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Staphylococcus aureus A9781
Macromolecule	Biotin ligase (protein)
Unique Ligands	BT5

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4DQ2 \| pdb_00004dq2	Download File View File

Structure of staphylococcus aureus biotin protein ligase in complex with biotinol-5'-amp

Wilce, M., Yap, M., Pendini, N., Soares de Costa, T., Polyak, S., Tieu, W., Booker, G., Wallace, J.

(2012) J Biological Chem 287: 17823-17832

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus subsp. aureus ECT-R 2
Macromolecule	Biotin-[acetyl-CoA-carboxylase] ligase (protein)
Unique Ligands	BTX

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4R06 \| pdb_00004r06	Download File View File

Crystal Structure of SR2067 bound to PPARgamma

Marrewijk, L., Kamenecka, T., Griffin, P.R., Bruning, J.B.

(2016) ACS Chem Biol 11: 273-283

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	3E7, SO4

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4WOP \| pdb_00004wop	Download File View File

Nucleotide Triphosphate Promiscuity in Mycobacterium tuberculosis Dethiobiotin Synthetase

Salaemae, W., Yap, M.Y., Wegener, K.L., Booker, G.W., Wilce, M.C.J., Polyak, S.W.

(2015) Tuberculosis (Edinb) 95: 259-266

Released	2015-04-08
Method	X-RAY DIFFRACTION 2.393 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, SO4

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6APW \| pdb_00006apw	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor

Cini, D.A., Wilce, M.C.J.

(2018) ACS Infect Dis 4: 175-184

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.614 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional ligase/repressor BirA (protein)
Unique Ligands	BTV

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6AQQ \| pdb_00006aqq	Download File View File

Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor

Cini, D.A., Wilce, M.C.J.

(2018) ACS Infect Dis 4: 175-184

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Staphylococcus aureus
Macromolecule	Bifunctional ligase/repressor BirA (protein)
Unique Ligands	BVY

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6CVE \| pdb_00006cve	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin Synthetase in complex with cytidine triphosphate and 7,8-diaminopelargonic acid

Thompson, A.P., Bruning, J.B., Wegener, K.L., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, DSD, FLC, MG

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6CVF \| pdb_00006cvf	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphate

Thompson, A.P., Bruning, J.B., Wegener, K.L., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CDP, MG

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6CVU \| pdb_00006cvu	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.426 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTN, SO4

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6CVV \| pdb_00006cvv	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with adenosine triphosphate (ATP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ATP, MG

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6CZB \| pdb_00006czb	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with uridine triphosphate (UTP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	MG, UTP

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6CZC \| pdb_00006czc	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with thymidine triphosphate (TTP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	MG, TTP

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6CZD \| pdb_00006czd	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with adenosine diphosphate

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ADP, MG

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6CZE \| pdb_00006cze	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with inosine triphosphate (ITP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ITT, MG

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6E05 \| pdb_00006e05	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in sulfate precipitant)

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, MG

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6E06 \| pdb_00006e06	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in citrate precipitant)

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, MG

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6F5M \| pdb_00006f5m	Download File View File

Crystal structure of highly glycosylated human leukocyte elastase in complex with a thiazolidinedione inhibitor

Hochscherf, J., Pietsch, M., Tieu, W., Kuan, K., Hautmann, S., Abell, A., Guetschow, M., Niefind, K.

(2018) Acta Crystallogr F Struct Biol Commun 74: 480-489

Released	2018-08-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil elastase (protein)
Unique Ligands	ACT, CQH, SO4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3RKW | pdb_00003rkw

3RKX | pdb_00003rkx

3RKY | pdb_00003rky

3V7C | pdb_00003v7c

3V7R | pdb_00003v7r

3V7S | pdb_00003v7s

3V8J | pdb_00003v8j

3V8K | pdb_00003v8k

3V8L | pdb_00003v8l

4DQ2 | pdb_00004dq2

4R06 | pdb_00004r06

4WOP | pdb_00004wop

6APW | pdb_00006apw

6AQQ | pdb_00006aqq

6CVE | pdb_00006cve

6CVF | pdb_00006cvf

6CVU | pdb_00006cvu

6CVV | pdb_00006cvv

6CZB | pdb_00006czb

6CZC | pdb_00006czc

6CZD | pdb_00006czd

6CZE | pdb_00006cze

6E05 | pdb_00006e05

6E06 | pdb_00006e06

6F5M | pdb_00006f5m