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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shuvalov, V.A."

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Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Homo sapiens (53)
	Influenza A virus (5)
	Influenza B virus (5)
	synthetic construct (5)
	H7N9 subtype (2)
	Mayaro virus (strain Brazil) (2)
	Rattus norvegicus (2)
	Chikungunya virus (1)
	Human immunodeficiency virus (1)
	Human immunodeficiency virus 1 (1)

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Taxonomy

	Eukaryota (53)
	Riboviria (20)
	other sequences (5)
	Archaea (2)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (49)
	ELECTRON MICROSCOPY (5)
	FIBER DIFFRACTION (2)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (58)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (15)
	2.0 - 2.5 (21)
	2.5 - 3.0 (11)
	3.0 - 3.5 (1)
	> 4.5 (7)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (30)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (20)
	Transferases (2)

Symmetry Type

	Asymmetric (44)
	Dihedral (6)
	Cyclic (3)
	Icosahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (21)
	Artifacts (22)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Low resolution protein structures (1)
	Peptides (2)

AllSelected

1 to 25 of 58 Structures

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1BOY \| pdb_00001boy	Download File View File

EXTRACELLULAR REGION OF HUMAN TISSUE FACTOR

Boys, C.W.G., Tuddenham, E.G.D., Harlos, K.

(1994) Nature 370: 662-666

Released	1996-06-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	HUMAN TISSUE FACTOR (protein)

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1LVQ \| pdb_00001lvq	Download File View File

IC3 of CB1 Bound to G(alpha)i

Ulfers, A.L., McMurry, J.L., Miller, A., Wang, L., Kendall, D.A., Mierke, D.F.

(2002) Protein Sci 11: 2526-2531

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cannabinoid receptor 1 (protein)

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1LVR \| pdb_00001lvr	Download File View File

IC3 of CB1 (L431A,A432L) Bound to G(alpha)i

Ulfers, A.L., McMurry, J.L., Miller, A., Wang, L., Kendall, D.A., Mierke, D.F.

(2002) Protein Sci 11: 2526-2531

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cannabinoid receptor 1 (protein)

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3HQV \| pdb_00003hqv	Download File View File

Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, rigid body refinement

Orgel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 9001-9005

Released	2009-07-14
Method	FIBER DIFFRACTION 5.16 Å
Organisms	Rattus norvegicus
Macromolecule	Collagen alpha-1(I) chain (protein) Collagen alpha-2(I) chain (protein)

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3HR2 \| pdb_00003hr2	Download File View File

Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, post rigid body refinement, 'relaxed'

Orgel, J.P.

(2006) Proc Natl Acad Sci U S A 103: 9001-9005

Released	2009-07-14
Method	FIBER DIFFRACTION 5.16 Å
Organisms	Rattus norvegicus
Macromolecule	Collagen alpha-1(I) chain (protein) Collagen alpha-2(I) chain (protein)

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3QGW \| pdb_00003qgw	Download File View File

Crystal Structure of ITK kinase bound to an inhibitor

Brown, K., Cheetham, G.M.T.

(2011) J Med Chem 54: 2341-2350

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ITK/TSK (protein)
Unique Ligands	L7A, PQC

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3QGY \| pdb_00003qgy	Download File View File

Crystal structure of ITK inhibitor complex

Brown, K., Cheetham, G.M.T.

(2011) J Med Chem 54: 2341-2350

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ITK/TSK (protein)
Unique Ligands	L7O, PQC

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4NQV \| pdb_00004nqv	Download File View File

Crystal Structure of HLA A*0101 in complex with NP44, an 9-mer influenza epitope

Rossjohn, J., Gras, S.

(2014) Proc Natl Acad Sci U S A 111: 1049-1054

Released	2013-12-25
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	H7N9 subtype Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-1 alpha chain (protein) Nucleoprotein (protein)

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4NQX \| pdb_00004nqx	Download File View File

Crystal Structure of HLA A*0101 in complex with NP44-S7N, an 9-mer influenza epitope

Rossjohn, J., Gras, S.

(2014) Proc Natl Acad Sci U S A 111: 1049-1054

Released	2013-12-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	H7N9 subtype Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-1 alpha chain (protein) NP44-S7N mutant peptide, CTELKLNDY (protein)

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5HHM \| pdb_00005hhm	Download File View File

Crystal Structure of the JM22 TCR in complex with HLA-A*0201 in complex with M1-F5L

Gras, S., Josephs, T.M., Rossjohn, J.

(2016) Proc Natl Acad Sci U S A 113: 4440-4445

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) JM22 TCR alpha chain (protein) JM22 TCR beta chain (protein) M1-F5L, GILGLVFTL (protein)

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5HHN \| pdb_00005hhn	Download File View File

Crystal Structure of HLA-A*0201 in complex with M1-F5L

Gras, S., Josephs, T.M., Rossjohn, J.

(2016) Proc Natl Acad Sci U S A 113: 4440-4445

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) M1-F5L, GILGLVFTL (protein)

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5HHO \| pdb_00005hho	Download File View File

Crystal Structure of the JM22 TCR in complex with HLA-A*0201 in complex with M1-G4E

Gras, S., Josephs, T.M., Rossjohn, J.

(2016) Proc Natl Acad Sci U S A 113: 4440-4445

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) JM22 TCR alpha chain (protein) JM22 TCR beta chain (protein) M1-G4E, GILEFVFTL (protein)

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5HHP \| pdb_00005hhp	Download File View File

Crystal Structure of HLA-A*0201 in complex with M1-G4E

Gras, S., Josephs, T.M., Rossjohn, J.

(2016) Proc Natl Acad Sci U S A 113: 4440-4445

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) M1-G4E, GILEFVFTL (protein)

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5HHQ \| pdb_00005hhq	Download File View File

Crystal Structure of HLA-A*0201 in complex with M1-L3W

Gras, S., Josephs, T.M., Rossjohn, J.

(2016) Proc Natl Acad Sci U S A 113: 4440-4445

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) M1-L3W, GIWGFVFTL (protein)

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5N88 \| pdb_00005n88	Download File View File

Crystal structure of antibody bound to viral protein

Bao, L., Hannon, C., Cruz-Migoni, A., Ptchelkine, D., Sun, M.-y., Derveni, M., Bunjobpol, W., Chambers, J.S., Simmons, A., Phillips, S.E.V., Rabbitts, T.H.

(2017) Sci Rep 7: 16869-16869

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein) VH59 antibody (protein)

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5OCG \| pdb_00005ocg	Download File View File

Discovery of small molecules binding to KRAS via high affinity antibody fragment competition method.

Cruz-Migoni, A., Ehebauer, M.T., Phillips, S.E.V., Quevedo, C.E., Rabbitts, T.H.

(2018) Nat Commun 9: 3169-3169

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	9R5, GNP, GOL, MG, PEG

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5OCO \| pdb_00005oco	Download File View File

Discovery of small molecules binding to KRAS via high affinity antibody fragment competition method.

Cruz-Migoni, A., Ehebauer, M.T., Phillips, S.E.V., Quevedo, C.E., Rabbitts, T.H.

(2018) Nat Commun 9: 3169-3169

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	9RK, CIT, GNP, MG, PEG

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5OCT \| pdb_00005oct	Download File View File

Discovery of small molecules binding to KRAS via high affinity antibody fragment competition method.

Cruz-Migoni, A., Ehebauer, M.T., Phillips, S.E.V., Quevedo, C.E., Rabbitts, T.H.

(2018) Nat Commun 9: 3169-3169

Released	2018-08-22
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	9R5, DMS, GNP, MG, PEG

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5OYM \| pdb_00005oym	Download File View File

HIV Integrase Binding Domain of Lens Epithelium-Derived Growth Factor

Rabbitts, T.H., Phillips, S.E.V., Cruz-Migoni, A., Carr, S.B., Hannon, C.

(2018) Acta Crystallogr F Struct Biol Commun 74: 143-149

Released	2018-03-07
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1-interacting protein (protein)

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5UHY \| pdb_00005uhy	Download File View File

A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection

Hasan, S.S., Miller, A., Sapparapu, G., Fernandez, E., Klose, T., Long, F., Fokine, A., Porta, J.C., Jiang, W., Diamond, M.S., Crowe Jr., J.E., Kuhn, R.J., Rossmann, M.G.

(2017) Nat Commun 8: 14722-14722

Released	2017-03-29
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Zika virus
Macromolecule	ZV67 Fab chain 1 (protein) ZV67 Fab chain 2 (protein) envelope protein (protein)

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6ER7 \| pdb_00006er7	Download File View File

CHEMOTAXIS PROTEIN CHEY FROM Pyrococcus horikoshiI

Paithankar, K.S., Enderle, M.E., Wirthensohn, D., Grininger, M., Oesterhelt, D.

(2019) Acta Crystallogr F Struct Biol Commun 75: 576-585

Released	2018-10-31
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Pyrococcus horikoshii
Macromolecule	120aa long hypothetical chemotaxis protein (CheY) (protein)

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6EXR \| pdb_00006exr	Download File View File

CHEMOTAXIS PROTEIN CHEY FROM Pyrococcus horikoshiI

Paithankar, K.S., Enderle, M.E., Wirthensohn, D., Grininger, M., Oesterhelt, D.

(2019) Acta Crystallogr F Struct Biol Commun 75: 576-585

Released	2018-12-12
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	120aa long hypothetical chemotaxis protein (CheY) (protein)