RCSB PDB: Search

6CVE \| pdb_00006cve	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin Synthetase in complex with cytidine triphosphate and 7,8-diaminopelargonic acid

Thompson, A.P., Bruning, J.B., Wegener, K.L., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, DSD, FLC, MG

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6CVF \| pdb_00006cvf	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphate

Thompson, A.P., Bruning, J.B., Wegener, K.L., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CDP, MG

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6CVU \| pdb_00006cvu	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.426 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTN, SO4

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6CVV \| pdb_00006cvv	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with adenosine triphosphate (ATP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ATP, MG

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6CZB \| pdb_00006czb	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with uridine triphosphate (UTP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	MG, UTP

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6CZC \| pdb_00006czc	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with thymidine triphosphate (TTP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	MG, TTP

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6CZD \| pdb_00006czd	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with adenosine diphosphate

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ADP, MG

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6CZE \| pdb_00006cze	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with inosine triphosphate (ITP) - promiscuous binding mode with disordered nucleoside

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) ACS Catal 8(11): 10774-10783

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	ITT, MG

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6E05 \| pdb_00006e05	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in sulfate precipitant)

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, MG

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6E06 \| pdb_00006e06	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine triphosphate solved by precipitant-ligand exchange (crystals grown in citrate precipitant)

Thompson, A.P., Wegener, K.L., Bruning, J.B., Polyak, S.W.

(2018) Acta Crystallogr D Struct Biol 74: 965-972

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTP, MG

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6NKA \| pdb_00006nka	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	DCZ, SO4

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6NKB \| pdb_00006nkb	Download File View File

Crystal structure of Dethiobiotin Synthetase from Mycobacterium tuberculosis in complex with 2'-deoxycytidine diphosphate

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	MG, YYY

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6NL4 \| pdb_00006nl4	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with gemcitabine

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	GEO, SO4

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6NL5 \| pdb_00006nl5	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine triphosphate

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.314 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	DCP, MG

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6NLZ \| pdb_00006nlz	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment degradation product B9D

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	KSJ, KSP, SO4

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6NMZ \| pdb_00006nmz	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with an intentionally produced fragment degradation product B9D

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	KSJ, KSP, SO4

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6NN0 \| pdb_00006nn0	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine and fragment degradation product B9D

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.343 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CTN, KSJ, KSP, SO4

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6NNZ \| pdb_00006nnz	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 4

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	KUD, KUG, SO4

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6NU6 \| pdb_00006nu6	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 5

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-05
Method	X-RAY DIFFRACTION 2.437 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L1V, L1Y, SO4

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6NVC \| pdb_00006nvc	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 6

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L67, SO4

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6NVD \| pdb_00006nvd	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with triazole linked compound 9

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L4S, SO4

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6NVE \| pdb_00006nve	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 7

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L4M, SO4

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6NVF \| pdb_00006nvf	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 8

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.989 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L5A, L5J, SO4

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6NWG \| pdb_00006nwg	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 3a

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.939 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	L6J

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6NWN \| pdb_00006nwn	Download File View File

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with glutamic acid linked compound 10

Thompson, A.P., Polyak, S.W., Wegener, K.L., Bruning, J.B.

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.005 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-dependent dethiobiotin synthetase BioD (protein)
Unique Ligands	CIT, L6M

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Scientific Name of Source Organism

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Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6CVE | pdb_00006cve

6CVF | pdb_00006cvf

6CVU | pdb_00006cvu

6CVV | pdb_00006cvv

6CZB | pdb_00006czb

6CZC | pdb_00006czc

6CZD | pdb_00006czd

6CZE | pdb_00006cze

6E05 | pdb_00006e05

6E06 | pdb_00006e06

6NKA | pdb_00006nka

6NKB | pdb_00006nkb

6NL4 | pdb_00006nl4

6NL5 | pdb_00006nl5

6NLZ | pdb_00006nlz

6NMZ | pdb_00006nmz

6NN0 | pdb_00006nn0

6NNZ | pdb_00006nnz

6NU6 | pdb_00006nu6

6NVC | pdb_00006nvc

6NVD | pdb_00006nvd

6NVE | pdb_00006nve

6NVF | pdb_00006nvf

6NWG | pdb_00006nwg

6NWN | pdb_00006nwn