RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Wilk, P."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 82 Structures.

Refinements

Structure Determination Methodology

experimental (82)

Scientific Name of Source Organism

	Homo sapiens (39)
	Mus musculus (10)
	Thermochaetoides thermophila DSM 1495 (8)
	Thermotoga maritima MSB8 (7)
	Caenorhabditis elegans (5)
	Campylobacter jejuni (3)
	Trichomonas vaginalis (3)
	Trichinella spiralis (2)
	Cereibacter sphaeroides (1)
	Cereibacter sphaeroides 2.4.1 (1)

More...

Taxonomy

	Eukaryota (68)
	Bacteria (12)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (80)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (82)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (43)
	2.0 - 2.5 (16)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (31)
	2020 - 2024 (43)

Enzyme Classification Name

	Transferases (33)
	Oxidoreductases (22)
	Hydrolases (21)

Symmetry Type

	Cyclic (56)
	Dihedral (12)
	Asymmetric (8)
	Octahedral (7)

SCOP Classification

	All alpha proteins (7)
	Alpha and beta proteins (a+b) (17)
	Alpha and beta proteins (a/b) (11)
	Artifacts (5)

AllSelected

1 to 25 of 82 Structures

Page 1 of 4

Sort by

Explore in 3D

3IHI \| pdb_00003ihi	Download File View File

Crystal structure of mouse thymidylate synthase

Dowiercial, A., Jarmula, A., Rypniewski, W.R., Sokolowska, M., Fraczyk, T., Ciesla, J., Rode, W.

(2016) Struct Chem

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

4E5O \| pdb_00004e5o	Download File View File

Crystal structure of mouse thymidylate synthase in complex with dUMP

Dowiercial, A., Jarmula, A., Rypniewski, W., Sokolowska, M., Fraczyk, T., Ciesla, J., Rode, W.

(2016) Struct Chem

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	BU1, UMP

Explore in 3D

4EB4 \| pdb_00004eb4	Download File View File

Crystal structure of mouse thymidylate synthase in ternary complex with dUMP and Tomudex

Dowiercial, A., Jarmula, A., Rypniewski, W.R., Wilk, P., Rode, W.

(2014) Biomed Res Int 2014: 945803

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	D16, DTT, GOL, MES, SO4, UMP

Explore in 3D

4EIN \| pdb_00004ein	Download File View File

Crystal structure of mouse thymidylate synthase in binary complex with a substrate analogue and strong inhibitor, N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate

Dowiercial, A., Jarmula, A., Rypniewski, W.R., Wilk, P., Kierdaszuk, B., Rode, W.

(2013) Pteridines

Released	2013-04-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	GOL, NOH

Explore in 3D

4EZ8 \| pdb_00004ez8	Download File View File

Crystal structure of mouse thymidylate sythase in ternary complex with N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate and the cofactor product, dihydrofolate

Dowiercial, A., Jarmula, A., Rypniewski, W., Wilk, P., Kierdaszuk, B., Banaszak, K., Gorecka, K., Rode, W.

(2013) Pteridines

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	DHF, GOL, NOH

Explore in 3D

4IQB \| pdb_00004iqb	Download File View File

High Resolution Crystal Structure of C.elegans Thymidylate Synthase

Wilk, P., Dowiercial, A., Banaszak, K., Jarmula, A., Rypniewski, W., Rode, W.

(2017) J Mol Graph Model 77: 33-50

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Caenorhabditis elegans
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

Explore in 3D

4IRR \| pdb_00004irr	Download File View File

Crystal Structure of C.elegans Thymidylate Synthase in Complex with dUMP

Wilk, P., Dowiercial, A., Banaszak, K., Jarmula, A., Rypniewski, W., Rode, W.

To be published

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Caenorhabditis elegans
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	DTT, UMP

Explore in 3D

4ISW \| pdb_00004isw	Download File View File

Crystal Structure of Phosphorylated C.elegans Thymidylate Synthase in Complex with dUMP

Wilk, P., Dowiercial, A., Banaszak, K., Jarmula, A., Rypniewski, W., Rode, W.

(2013) Bioorg Chem 52C: 44-49

Released	2013-12-11
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Caenorhabditis elegans
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	UMP

Explore in 3D

4PSG \| pdb_00004psg	Download File View File

Crystal Structure of C.elegans Thymidylate Synthase in complex with an inhibitor N(4)OHdCMP

Wilk, P., Jarmula, A., Rode, W.

To be published

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	NOH

Explore in 3D

5BY6 \| pdb_00005by6	Download File View File

Crystal structure of Trichinella spiralis thymidylate synthase complexed with dUMP

Dowiercial, A., Jarmula, A., Rypniewski, W., Fraczyk, T., Wilk, P., Rode, W.

(2017) J Mol Graph Model 77: 33-50

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trichinella spiralis
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	DTT, GOL, UMP

Explore in 3D

5FCT \| pdb_00005fct	Download File View File

Mouse thymidylate synthase in ternary complex with FdUMP and methylenetetrahydrofolate.

Dowiercial, A., Wilk, P., Jarmula, A., Rode, W.

(2016) Struct Chem

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	C2F, UFP

Explore in 3D

5J5Z \| pdb_00005j5z	Download File View File

Crystal structure of the D444V disease-causing mutant of the human dihydrolipoamide dehydrogenase

Szabo, E., Mizsei, R., Zambo, Z., Torocsik, B., Weiss, M.S., Adam-Vizi, V., Ambrus, A.

(2018) Free Radic Biol Med 124: 214-220

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Dihydrolipoyl dehydrogenase, mitochondrial (protein)
Unique Ligands	FAD, GOL, PO4

Explore in 3D

5M4G \| pdb_00005m4g	Download File View File

Crystal Structure of Wild-Type Human Prolidase with Mn ions

Wilk, P., Weiss, M.S., Mueller, U., Dobbek, H.

(2017) FEBS J 284: 2870-2885

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GOL, MN, OH

Explore in 3D

5M4J \| pdb_00005m4j	Download File View File

Crystal Structure of Wild-Type Human Prolidase with GlyPro ligand

Wilk, P., Weiss, M.S., Mueller, U., Dobbek, H.

(2017) FEBS J 284: 2870-2885

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GLY, GOL, NA, PRO

Explore in 3D

5M4L \| pdb_00005m4l	Download File View File

Crystal Structure of Wild-Type Human Prolidase with Mg ions and LeuPro ligand

Wilk, P., Weiss, M.S., Mueller, U., Dobbek, H.

(2017) FEBS J 284: 2870-2885

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GOL, LEU, MG, NA, OH, PRO

Explore in 3D

5M4Q \| pdb_00005m4q	Download File View File

Crystal Structure of Wild-Type Human Prolidase with Mn ions and Pro ligand

Wilk, P., Weiss, M.S., Mueller, U., Dobbek, H.

(2017) FEBS J 284: 2870-2885

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GOL, MN, OH, PRO

Explore in 3D

5M4Z \| pdb_00005m4z	Download File View File

Crystal structure of the complex of T.spiralis thymidylate synthase with N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate, crystallized in the presence of N(5,10)-methylenetetrahydrofolate

Wilk, P., Maj, P., Jarmula, A., Dowiercial, A., Rode, W.

(2021) Int J Mol Sci 22:

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.179 Å
Organisms	Trichinella spiralis
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	7K8, GOL

Explore in 3D

5MBY \| pdb_00005mby	Download File View File

Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Piwowarczyk, R., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GLY, GOL, MN, OH, PRO

Explore in 3D

5MBZ \| pdb_00005mbz	Download File View File

Crystal Structure of Ser202Phe mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	CL, GLY, GOL, MN, NA, OH, PRO

Explore in 3D

5MC0 \| pdb_00005mc0	Download File View File

Crystal Structure of delTyr231 mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	CL, GLY, GOL, MN, NA, OH, PRO

Explore in 3D

5MC1 \| pdb_00005mc1	Download File View File

Crystal Structure of Asp276Asn mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GLY, GOL, MN, NA, PRO

Explore in 3D

5MC2 \| pdb_00005mc2	Download File View File

Crystal Structure of Gly278Asp mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GLY, GOL, MN, NA, PRO

Explore in 3D

5MC3 \| pdb_00005mc3	Download File View File

Crystal Structure of Glu412Lys mutant of Human Prolidase with Mn ions and GlyPro ligand

Wilk, P., Mueller, U., Dobbek, H., Weiss, M.S.

(2018) FEBS J 285: 3422-3441

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	GLY, GOL, MN, NA, OH, PRO