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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "KIP1"

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Homo sapiens (9)

Taxonomy

Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.5 - 4.0 (5)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

Transferases (8)

Symmetry Type

Asymmetric (9)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All alpha proteins (1)

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1 to 9 of 9 Structures

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5UQ3 \| pdb_00005uq3	Download File View File

Crystal structure of human Cdk2-Spy1-P27 ternary complex

McGrath, D.A., Tripathi, S.M., Rubin, S.M.

(2017) EMBO J 36: 2251-2262

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 2 (protein) Cyclin-dependent kinase inhibitor 1B (protein) Speedy protein A (protein)

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6ATH \| pdb_00006ath	Download File View File

Cdk2/cyclin A/p27-KID-deltaC

White, S.W., Yun, M.

(2019) Nat Commun 10: 1676-1676

Released	2018-09-12
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-A2 (protein) Cyclin-dependent kinase 2 (protein) Cyclin-dependent kinase inhibitor 1B (protein)
Unique Ligands	SO4

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6P8E \| pdb_00006p8e	Download File View File

Crystal structure of CDK4 in complex with CyclinD1 and P27

Guiley, K.Z., Stevenson, J.W., Lou, K., Barkovich, K.J., Bunch, K., Tripathi, S.M., Shokat, K.M., Rubin, S.M.

(2019) Science 366:

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 4 (protein) Cyclin-dependent kinase inhibitor 1B (protein) G1/S-specific cyclin-D1 (protein)
Unique Ligands	MG

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6P8F \| pdb_00006p8f	Download File View File

Crystal structure of CDK4 in complex with CyclinD1 and P27

Guiley, K.Z., Stevenson, J.W., Lou, K., Barkovich, K.J., Bunch, K., Tripathi, S.M., Shokat, K.M., Rubin, S.M.

(2019) Science 366:

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 4 (protein) Cyclin-dependent kinase inhibitor 1B (protein) G1/S-specific cyclin-D1 (protein)

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6P8G \| pdb_00006p8g	Download File View File

Crystal structure of CDK4 in complex with CyclinD1 and P27

Guiley, K.Z., Stevenson, J.W., Lou, K., Barkovich, K.J., Bunch, K., Tripathi, S.M., Shokat, K.M., Rubin, S.M.

(2019) Science 366:

Released	2019-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 4 (protein) Cyclin-dependent kinase inhibitor 1B (protein) G1/S-specific cyclin-D1 (protein)

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7B5L \| pdb_00007b5l	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12
Unique Ligands	SY8, ZN

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7B5M \| pdb_00007b5m	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-17
Method	ELECTRON MICROSCOPY 3.91 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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7B5R \| pdb_00007b5r	Download File View File

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27

Horn-Ghetko, D., Prabu, J.R., Schulman, B.A.

(2021) Nature 590: 671-676

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7

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8BYL \| pdb_00008byl	Download File View File

Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex

Rowland, R.J., Salamina, M., Endicott, J.A., Noble, M.E.M.

(2023) Sci Rep 13: 10718-10718

Released	2023-06-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase inhibitor 1B (protein) Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1 (protein) S-phase kinase-associated protein 2 (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5UQ3 | pdb_00005uq3

Crystal structure of human Cdk2-Spy1-P27 ternary complex

6ATH | pdb_00006ath

Cdk2/cyclin A/p27-KID-deltaC

6P8E | pdb_00006p8e

Crystal structure of CDK4 in complex with CyclinD1 and P27

6P8F | pdb_00006p8f

Crystal structure of CDK4 in complex with CyclinD1 and P27

6P8G | pdb_00006p8g

Crystal structure of CDK4 in complex with CyclinD1 and P27

7B5L | pdb_00007b5l

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1

7B5M | pdb_00007b5m

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2

7B5R | pdb_00007b5r

Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27

8BYL | pdb_00008byl

Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5UQ3 | pdb_00005uq3

6ATH | pdb_00006ath

6P8E | pdb_00006p8e

6P8F | pdb_00006p8f

6P8G | pdb_00006p8g

7B5L | pdb_00007b5l

7B5M | pdb_00007b5m

7B5R | pdb_00007b5r

8BYL | pdb_00008byl