Structural Insights into RNA Phosphorylation by the RNase PNK Module of the Human Rixosome Complex.
Gordon, J., Stanley, R.E.To be published.
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation 3D Report Full Report
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal biogenesis protein LAS1L | 777 | Homo sapiens | Mutation(s): 3  Gene Names: LAS1L, MSTP060 EC: 3.1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
GTEx:  ENSG00000001497  | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y4W2 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polynucleotide 5'-hydroxyl-kinase NOL9 | 605 | Homo sapiens | Mutation(s): 0  Gene Names: NOL9 EC: 2.7.1.78 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
GTEx:  ENSG00000162408  | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SY16 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | ||||
| Molecule | Chains | Length | Organism | Image |
|---|---|---|---|---|
| CAA RNA | 3 | Homo sapiens | ![]() | |
Sequence AnnotationsExpand | ||||
Reference Sequence | ||||
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP (Subject of Investigation/LOI) Download:Ideal Coordinates CCD File | G [auth B], I [auth E] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N | |||
| MG Download:Ideal Coordinates CCD File | H [auth B], J [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC |
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | -- |