Download MendeleyCrystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers.
Schneider, B., Ginell, S.L., Jones, R., Gaffney, B., Berman, H.M.(1992) Biochemistry 31: 9622-9628
- PubMed: 1390739
- DOI: https://doi.org/10.1021/bi00155a014
- Primary Citation of Related Structures:
1D76 - PubMed Abstract:
The crystal and molecular structure of d(CGUA'CG)2 (where A' is 2-aminoadenine) has been determined and refined to an R factor of 13.8% for data 8.0-1.3 A. The structure is very similar to the original Z-DNA structures with the sequence d(CGCGCG)2 [Gessner, R. V., Frederick, C. A., Quigley, G. J., Rich, A., & Wang, A. H.-J. (1989) J. Biol. Chem. 264, 7921] and shows that the substitution of 2-aminoadenine-uracil base pairs in the two central steps is consistent with Z-DNA formation. In addition, we show how waters mediating intermolecular interactions may help to explain the ZI-ZII conformational pattern found in many Z-DNA structures.
Organizational Affiliation:
Department of Chemistry, Rutgers, State University of New Jersey, New Brunswick 08903.
