The 1.3 A Crystal Structure of Rhodobacter sphaeroides Dimethylsulfoxide Reductase Reveals Two Distinct Molybdenum Coordination Environments
Li, H.K., Temple, K., Rajagopalan, K.V., Schindelin, H.(2000) J Am Chem Soc 122: 7673-7680
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
(2000) J Am Chem Soc 122: 7673-7680
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DIMETHYL SULFOXIDE REDUCTASE | 780 | Cereibacter sphaeroides | Mutation(s): 1 EC: 1.8.99 (PDB Primary Data), 1.7.2.3 (UniProt), 1.8.5.3 (UniProt) | ![]() | |
UniProt | |||||
Find proteins for Q57366 (Cereibacter sphaeroides) Explore Q57366 Go to UniProtKB: Q57366 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q57366 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MGD Query on MGD | G [auth A], H [auth A] | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C20 H26 N10 O13 P2 S2 VQAGYJCYOLHZDH-ILXWUORBSA-N | |||
EPE Query on EPE | L [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
GLC Query on GLC | B [auth A], C [auth A], D [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N | |||
CD Query on CD | F [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
6MO Query on 6MO | I [auth A] | MOLYBDENUM(VI) ION Mo HCNGUXXTNNIKCQ-UHFFFAOYSA-N | |||
O Query on O | J [auth A], K [auth A] | OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 102.176 | α = 90 |
b = 141.718 | β = 90 |
c = 59.812 | γ = 90 |
Software Name | Purpose |
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AMoRE | phasing |
REFMAC | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |