Download MendeleyStructural studies of aspartate aminotransferase from Phormidium lapideum
Kim, H., Sawa, Y., Hamada, K.To be published.
1J32
Aspartate Aminotransferase from Phormidium lapideum
- PDB DOI: https://doi.org/10.2210/pdb1J32/pdb
- Classification: TRANSFERASE
- Organism(s): Phormidium lapideum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2003-01-17 Released: 2003-02-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.238 (Depositor)
- R-Value Work: 0.198 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| aspartate aminotransferase | 388 | Phormidium lapideum | Mutation(s): 0 EC: 2.6.1.1 (PDB Primary Data), 2.6.1 (UniProt) |  | |
UniProt | |||||
Find proteins for Q8RR70 (Phormidium lapideum) Explore Q8RR70 Go to UniProtKB: Q8RR70 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8RR70 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A], D [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.238 (Depositor)
- R-Value Work: 0.198 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.22 | α = 90 |
| b = 131.26 | β = 90 |
| c = 107.85 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| EPMR | phasing |
| CNS | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2003-02-04 Deposition Author(s): Kim, H., Sawa, Y., Hamada, K.
Revision History (Full details and data files)
- Version 1.0: 2003-02-04
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
