1MV5

Crystal structure of LmrA ATP-binding domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 
    0.283 (Depositor), 0.300 (DCC) 
  • R-Value Work: 
    0.251 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 
    0.244 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ATPClick on this verticalbar to view detailsBest fitted ADPClick on this verticalbar to view details

This is version 1.5 of the entry. See complete history


Literature

Crystal structure of LmrA ATP-binding domain reveals the two-site alternating mechanism at molecular level

Yuan, Y.Chen, H.Patel, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Multidrug resistance ABC transporter ATP-binding and permease protein
A, B, C, D
243Lactococcus lactisMutation(s): 0 
EC: 7.6.2.2
UniProt
Find proteins for Q9CHL8 (Lactococcus lactis subsp. lactis (strain IL1403))
Explore Q9CHL8 
Go to UniProtKB:  Q9CHL8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9CHL8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free:  0.283 (Depositor), 0.300 (DCC) 
  • R-Value Work:  0.251 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 0.244 (Depositor) 
Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 141.866α = 90
b = 141.866β = 90
c = 120.965γ = 120
Software Package:
Software NamePurpose
X-PLORrefinement
SCALEPACKdata scaling
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
CNSphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ATPClick on this verticalbar to view detailsBest fitted ADPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-12-02
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-07-24
    Changes: Data collection, Refinement description
  • Version 1.4: 2022-12-21
    Changes: Database references, Derived calculations
  • Version 1.5: 2024-05-22
    Changes: Data collection