1UYQ

mutated b-glucosidase A from Paenibacillus polymyxa showing increased stability


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.227 (Depositor), 0.221 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 
    0.195 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NFGClick on this verticalbar to view detailsBest fitted G2FClick on this verticalbar to view details

This is version 2.2 of the entry. See complete history


Literature

Mutated B-Glucosidase a from Paenibacillus Polymyxa Showing Increased Stability

Isorna, P.Polaina, J.Sanz-Aparicio, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BETA-GLUCOSIDASE A447Paenibacillus polymyxaMutation(s): 2 
EC: 3.2.1.21
UniProt
Find proteins for P22073 (Paenibacillus polymyxa)
Explore P22073 
Go to UniProtKB:  P22073
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22073
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NFG
Query on NFG

Download Ideal Coordinates CCD File 
C [auth A]2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside
C12 H13 F N2 O9
UFSBFVZQJZMIOU-LZQZFOIKSA-N
G2F
Query on G2F

Download Ideal Coordinates CCD File 
B [auth A]2-deoxy-2-fluoro-alpha-D-glucopyranose
C6 H11 F O5
ZCXUVYAZINUVJD-UKFBFLRUSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.227 (Depositor), 0.221 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 0.195 (Depositor) 
Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 136.416α = 90
b = 136.416β = 90
c = 173.341γ = 90
Software Package:
Software NamePurpose
CNSrefinement
MOSFLMdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NFGClick on this verticalbar to view detailsBest fitted G2FClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-03-03
    Type: Initial release
  • Version 1.1: 2011-05-07
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2017-06-21
    Changes: Advisory, Atomic model, Derived calculations
  • Version 2.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Other, Structure summary
  • Version 2.2: 2024-10-09
    Changes: Data collection, Database references, Structure summary