1VQB | pdb_00001vqb

GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)

• PDB DOI: https://doi.org/10.2210/pdb1VQB/pdb
• Entry: 1VQB supersedes: 1BGH

• Classification: DNA BINDING PROTEIN
• Organism(s): Enterobacteria phage f1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1996-08-14 Released: 1997-02-12 
• Deposition Author(s): Skinner, M.M., Zhang, H., Leschnitzer, D.H., Guan, Y., Bellamy, H., Sweet, R.M., Gray, C.W., Konings, R.N.H., Wang, A.H.-J., Terwilliger, T.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Work: 
  0.198 (Depositor) 
• R-Value Observed: 
  0.198 (Depositor) 

Literature

Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein.

Skinner, M.M., Zhang, H., Leschnitzer, D.H., Guan, Y., Bellamy, H., Sweet, R.M., Gray, C.W., Konings, R.N., Wang, A.H., Terwilliger, T.C.

(1994) Proc Natl Acad Sci U S A 91: 2071-2075

• PubMed: 8134350 
• DOI: https://doi.org/10.1073/pnas.91.6.2071
• Primary Citation Related Structures: 
  1VQB


• PubMed Abstract: 
  

  The crystal structure of the dimeric gene V protein of bacteriophage f1 was determined using multiwavelength anomalous diffraction on the selenomethionine-containing wild-type and isoleucine-47-->methionine mutant proteins with x-ray diffraction data phased to 2.5 A resolution. The structure of the wild-type protein has been refined to an R factor of 19.2% using native data to 1.8 A resolution. The structure of the gene V protein was used to obtain a model for the protein portion of the gene V protein-single-stranded DNA complex.

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Organizational Affiliation: 
• Life Sciences Division, Los Alamos National Laboratory, NM 87545.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 9.7 kDa 
• Atom Count: 711 
• Modeled Residue Count: 86 
• Deposited Residue Count: 87 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GENE V PROTEIN	A	87	Enterobacteria phage f1	Mutation(s): 0
UniProt
Find proteins for P69543 (Enterobacteria phage f1) Explore P69543  Go to UniProtKB:  P69543

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Work:  0.198 (Depositor) 
• R-Value Observed: 0.198 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.19	α = 90
b = 28.11	β = 103.54
c = 42.74	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
MAR	data reduction
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1997-02-12 
Deposition Author(s): Skinner, M.M., Zhang, H., Leschnitzer, D.H., Guan, Y., Bellamy, H., Sweet, R.M., Gray, C.W., Konings, R.N.H., Wang, A.H.-J., Terwilliger, T.C.
• This entry supersedes: 1BGH

Revision History  

• Version 1.0: 1997-02-12
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2011-11-16
  Changes: Atomic model
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references, Other, Structure summary