1XUT | pdb_00001xut

Solution structure of TACI-CRD2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 1XUT

This is version 1.4 of the entry. See complete history

Literature

Structures of APRIL-receptor complexes: like BCMA, TACI employs only a single cysteine-rich domain for high affinity ligand binding.

Hymowitz, S.G.Patel, D.R.Wallweber, H.J.Runyon, S.Yan, M.Yin, J.Shriver, S.K.Gordon, N.C.Pan, B.Skelton, N.J.Kelley, R.F.Starovasnik, M.A.

(2005) J Biological Chem 280: 7218-7227

  • DOI: https://doi.org/10.1074/jbc.M411714200
  • Primary Citation Related Structures: 
    1XU1, 1XU2, 1XUT

  • PubMed Abstract: 

    TACI is a member of the tumor necrosis factor receptor superfamily and serves as a key regulator of B cell function. TACI binds two ligands, APRIL and BAFF, with high affinity and contains two cysteine-rich domains (CRDs) in its extracellular region; in contrast, BCMA and BR3, the other known high affinity receptors for APRIL and BAFF, respectively, contain only a single or partial CRD. However, another form of TACI exists wherein the N-terminal CRD is removed by alternative splicing. We find that this shorter form is capable of ligand-induced cell signaling and that the second CRD alone (TACI_d2) contains full affinity for both ligands. Furthermore, we report the solution structure and alanine-scanning mutagenesis of TACI_d2 along with co-crystal structures of APRIL.TACI_d2 and APRIL.BCMA complexes that together reveal the mechanism by which TACI engages high affinity ligand binding through a single CRD, and we highlight sources of ligand-receptor specificity within the APRIL/BAFF system.


  • Organizational Affiliation
    • Department of Protein Engineering, Molecular Oncology, Medicinal Chemistry, and Immunology, Genentech, Inc., South San Francisco, California 94080, USA.

Macromolecule Content 

  • Total Structure Weight: 5.32 kDa 
  • Atom Count: 369 
  • Modeled Residue Count: 46 
  • Deposited Residue Count: 46 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tumor necrosis factor receptor superfamily member 13B46Homo sapiensMutation(s): 0 
Gene Names: TNFRSF13BTACI
UniProt & NIH Common Fund Data Resources
Find proteins for O14836 (Homo sapiens)
Explore O14836 
Go to UniProtKB:  O14836
PHAROS:  O14836
GTEx:  ENSG00000240505 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14836
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2004-11-09
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-10-30
    Changes: Data collection, Structure summary