23ZR | pdb_000023zr

Crystal structure of MonCI mutant N278R-S421A-Q441P-A253V


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.271 (Depositor), 0.274 (DCC) 
  • R-Value Work: 
    0.225 (Depositor), 0.228 (DCC) 
  • R-Value Observed: 
    0.228 (Depositor) 

Starting Model: experimental
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Literature

Co-evolution-guided engineering of monensin biosynthetic monooxygenase MonCI reveals mechanistic basis for concurrent stability and catalytic enhancement.

Xiao, H.Li, J.Zhou, J.Liu, C.Deng, Y.Wang, S.Tong, Z.Liu, J.Zheng, Z.Zhong, J.Li, H.Chen, X.

(2026) Int J Biol Macromol : 154119-154119

  • DOI: https://doi.org/10.1016/j.ijbiomac.2026.154119
  • Primary Citation Related Structures: 
    23ZR, 23ZV, 24BG, 24CI

  • PubMed Abstract: 

    Improving enzyme stability without compromising catalytic activity remains a major challenge in protein engineering. Here, we present a co-evolution-guided strategy to enhance both thermostability and catalytic performance of the flavin-dependent monooxygenase MonCI, an enzyme involved in monensin biosynthesis. By combining sequence covariation analysis with structural filtering, a focused library of 15 single mutants yielded 4 variants with increased stability and activity. Combinatorial assembly generated triple, quadruple and quintuple mutants, with the best-performing quadruple variants exhibiting up to a 10 °C increase in melting temperature, a 2.3-fold increase in specific activity, and a 2.1-fold longer half-life, accompanied by enhanced turnover despite reduced substrate affinity. Crystal structures and molecular dynamics simulations reveal that stabilization arises from strengthened intramolecular networks of hydrogen bonds, salt bridges, and hydrophobic interactions, while epistatic effects limit additive improvements. This work provides mechanistic insight into how co-evolving residues modulate enzyme structure and function, presents a useful co-evolution-guided strategy for enzyme design, and advances MonCI as a promising biocatalyst for asymmetric epoxidation.


  • Organizational Affiliation
    • Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710127, China.

Macromolecule Content 

  • Total Structure Weight: 223.7 kDa 
  • Atom Count: 14,546 
  • Modeled Residue Count: 1,898 
  • Deposited Residue Count: 2,044 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MonCI
A, B, C, D
511Streptomyces virginiaeMutation(s): 4 
Gene Names: monC1monCI
UniProt
Find proteins for Q846W9 (Streptomyces virginiae)
Explore Q846W9 
Go to UniProtKB:  Q846W9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ846W9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.271 (Depositor), 0.274 (DCC) 
  • R-Value Work:  0.225 (Depositor), 0.228 (DCC) 
  • R-Value Observed: 0.228 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.525α = 90
b = 93.511β = 106.32
c = 127.191γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China22377098

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-02
    Type: Initial release