2B69

Crystal Structure of Human UDP-glucoronic acid decarboxylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 
    0.162 (Depositor), 0.136 (DCC) 
  • R-Value Work: 
    0.134 (Depositor), 0.139 (DCC) 
  • R-Value Observed: 
    0.136 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NADClick on this verticalbar to view detailsBest fitted UDPClick on this verticalbar to view details

This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of Human UDP-glucoronic acid decarboxylase

Ugochukwu, E.Dubinina, E.Kavanagh, K.Sundstrom, M.Weigelt, J.Edwards, A.Arrowsmith, C.von Delft, F.Oppermann, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UDP-glucuronate decarboxylase 1343Homo sapiensMutation(s): 10 
Gene Names: UXS1
EC: 4.1.1.35
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NBZ7 (Homo sapiens)
Explore Q8NBZ7 
Go to UniProtKB:  Q8NBZ7
PHAROS:  Q8NBZ7
GTEx:  ENSG00000115652 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NBZ7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free:  0.162 (Depositor), 0.136 (DCC) 
  • R-Value Work:  0.134 (Depositor), 0.139 (DCC) 
  • R-Value Observed: 0.136 (Depositor) 
Space Group: P 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46α = 90
b = 45β = 97
c = 85γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SHELXDphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NADClick on this verticalbar to view detailsBest fitted UDPClick on this verticalbar to view details

Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2005-10-18
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Structure summary