2BHH | pdb_00002bhh

HUMAN CYCLIN DEPENDENT PROTEIN KINASE 2 IN COMPLEX WITH THE INHIBITOR 4-HYDROXYPIPERINDINESULFONYL-INDIRUBINE

PDB DOI: https://doi.org/10.2210/pdb2BHH/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2005-01-11 Released: 2005-03-09
Deposition Author(s): Schaefer, M., Jautelat, R., Brumby, T., Briem, H., Eisenbrand, G., Schwahn, S., Krueger, M., Luecking, U., Prien, O., Siemeister, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.325 (Depositor), 0.279 (DCC)
R-Value Work:
0.244 (Depositor), 0.279 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

From the Insoluble Dye Indirubin Towards Highly Active, Soluble Cdk2-Inhibitors

Schaefer, M., Jautelat, R., Brumby, T., Briem, H., Eisenbrand, G., Schwahn, S., Krueger, M., Luecking, U., Prien, O., Siemeister, G.

(2005) Chembiochem 6: 531

PubMed: 15742375 Search on PubMed
DOI: https://doi.org/10.1002/cbic.200400108
Primary Citation Related Structures:
2BHE, 2BHH

Organizational Affiliation

Medicinal Chemistry, Research Center Europe, Schering AG, 13342 Berlin, Germany. rolf.jautelat@schering.de

Macromolecule Content

Total Structure Weight: 34.42 kDa
Atom Count: 2,310
Modeled Residue Count: 274
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CELL DIVISION PROTEIN KINASE 2	A	298	Homo sapiens	Mutation(s): 0 EC: 2.7.1.37 (PDB Primary Data), 2.7.11.22 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P24941 (Homo sapiens) Explore P24941 Go to UniProtKB: P24941
PHAROS: P24941 GTEx: ENSG00000123374
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P24941
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
RYU Query on RYU Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(2E,3S)-3-HYDROXY-5'-[(4-HYDROXYPIPERIDIN-1-YL)SULFONYL]-3-METHYL-1,3-DIHYDRO-2,3'-BIINDOL-2'(1'H)-ONE C₂₂ H₂₃ N₃ O₅ S AYOAIABDFUJDKQ-SQJPUDIVSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.325 (Depositor), 0.279 (DCC)
R-Value Work: 0.244 (Depositor), 0.279 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.679	α = 90
b = 69.526	β = 90
c = 71.168	γ = 90

Software Package:

Software Name	Purpose
CNX	refinement
SAINT	data reduction
SADABS	data scaling
AMoRE	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2005-03-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-03-09
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description