2DG7 | pdb_00002dg7

Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)

PDB DOI: https://doi.org/10.2210/pdb2DG7/pdb

Classification: GENE REGULATION
Organism(s): Streptomyces coelicolor A3(2)
Expression System: Rhodococcus erythropolis
Mutation(s): Yes

Deposited: 2006-03-08 Released: 2007-03-13
Deposition Author(s): Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.276 (Depositor), 0.228 (DCC)
R-Value Work:
0.230 (Depositor), 0.236 (DCC)
R-Value Observed:
0.230 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2DG7

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)

Hayashi, T., Tanaka, Y., Sakai, N., Yao, M., Tamura, T., Tanaka, I.

To be published.

Macromolecule Content

Total Structure Weight: 21.44 kDa
Atom Count: 1,481
Modeled Residue Count: 187
Deposited Residue Count: 195
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative transcriptional regulator	A	195	Streptomyces coelicolor A3(2)	Mutation(s): 2
UniProt
Find proteins for Q9RK42 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q9RK42 Go to UniProtKB: Q9RK42
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9RK42
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.276 (Depositor), 0.228 (DCC)
R-Value Work: 0.230 (Depositor), 0.236 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.952	α = 90
b = 42.864	β = 90
c = 43.933	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-03-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-03-13
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.