2F9H | pdb_00002f9h

The Crystal Structure of PTS System IIA Component from Enterococcus faecalis V583

PDB DOI: https://doi.org/10.2210/pdb2F9H/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Enterococcus faecalis V583
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2005-12-05 Released: 2006-01-17
Deposition Author(s): Kim, Y., Quartey, P., Moy, S., Bargassa, M., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free:
0.229 (Depositor), 0.225 (DCC)
R-Value Work:
0.169 (Depositor), 0.168 (DCC)
R-Value Observed:
0.169 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2F9H

This is version 1.3 of the entry. See complete history.

Literature

The Crystal Structure of PTS System IIA Component from Enterococcus faecalis V583

Kim, Y., Quartey, P., Abdullah, J., Collart, F., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 28.37 kDa
Atom Count: 2,110
Modeled Residue Count: 240
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PTS system, IIA component	A, B	129	Enterococcus faecalis V583	Mutation(s): 3
UniProt
Find proteins for Q831B0 (Enterococcus faecalis (strain ATCC 700802 / V583)) Explore Q831B0 Go to UniProtKB: Q831B0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q831B0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å
R-Value Free: 0.229 (Depositor), 0.225 (DCC)
R-Value Work: 0.169 (Depositor), 0.168 (DCC)
R-Value Observed: 0.169 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.249	α = 90
b = 58.249	β = 90
c = 140.443	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-2000	data scaling
HKL-3000	phasing
MLPHARE	phasing
RESOLVE	phasing
SHELXE	model building
SHELXD	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-01-17

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2006-01-17
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.