2G2D

Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb2G2D/pdb

Classification: TRANSFERASE
Organism(s): Mycobacterium tuberculosis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2006-02-15 Released: 2006-03-28
Deposition Author(s): Moon, J.H., Kaviratne, A., Yu, M., Bursey, E.H., Hung, L.-W., Lekin, T.P., Segelke, B.W., Terwilliger, T.C., Kim, C.-Y., TB Structural Genomics Consortium (TBSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.228 (Depositor), 0.230 (DCC)
R-Value Work:
0.194 (Depositor), 0.190 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis.

Moon, J.H., Kaviratne, A., Yu, M., Bursey, E.H., Hung, L.-W., Lekin, T.P., Segelke, B.W., Terwilliger, T.C., Kim, C.-Y.

To be published.

Macromolecule Content

Total Structure Weight: 20.72 kDa
Atom Count: 1,288
Modelled Residue Count: 160
Deposited Residue Count: 193
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP:cobalamin adenosyltransferase	A	193	Mycobacterium tuberculosis	Mutation(s): 0 EC: 2.5.1.17
UniProt
Find proteins for P9WP99 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WP99 Go to UniProtKB: P9WP99
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P9WP99
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.228 (Depositor), 0.230 (DCC)
R-Value Work: 0.194 (Depositor), 0.190 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: I 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 131.318	α = 90
b = 131.318	β = 90
c = 131.318	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-03-28

Deposition Author(s):

Terwilliger, T.C.

TB Structural Genomics Consortium (TBSGC)

Revision History (Full details and data files)

Version 1.0: 2006-03-28
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.