2G6Z | pdb_00002g6z

Crystal structure of human DUSP5

• PDB DOI: https://doi.org/10.2210/pdb2G6Z/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-02-26 Released: 2007-01-16 
• Deposition Author(s): Kim, S.J., Ryu, S.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 
  0.291 (Depositor), 0.289 (DCC) 
• R-Value Work: 
  0.244 (Depositor), 0.244 (DCC) 
• R-Value Observed: 
  0.248 (Depositor) 

Literature

Crystal structure of the catalytic domain of human DUSP5, a dual specificity MAP kinase protein phosphatase

Jeong, D.G., Cho, Y.H., Yoon, T.S., Kim, J.H., Ryu, S.E., Kim, S.J.

(2007) Proteins 66: 253-258

• PubMed: 17078075 
• DOI: https://doi.org/10.1002/prot.21224
• Primary Citation Related Structures: 
  2G6Z

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Organizational Affiliation: 
• Systemic Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology, 52 Eoeun-Dong, Yuseong-Gu, Daejeon 305-333, Republic of Korea.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 70.05 kDa 
• Atom Count: 3,548 
• Modeled Residue Count: 436 
• Deposited Residue Count: 633 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dual specificity protein phosphatase 5	A, B, C	211	Homo sapiens	Mutation(s): 0  EC: 3.1.3.48 (PDB Primary Data), 3.1.3.16 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q16690 (Homo sapiens) Explore Q16690  Go to UniProtKB:  Q16690
PHAROS:  Q16690 GTEx:  ENSG00000138166

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	D [auth A], E [auth A], F [auth B], G [auth B], H [auth C], I [auth C]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free:  0.291 (Depositor), 0.289 (DCC) 
• R-Value Work:  0.244 (Depositor), 0.244 (DCC) 
• R-Value Observed: 0.248 (Depositor) 

Space Group: P 4₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.712	α = 90
b = 92.712	β = 90
c = 165.213	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
EPMR	phasing
CNS	refinement
CCP4	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-16 
Deposition Author(s): Kim, S.J., Ryu, S.E.

Revision History  

• Version 1.0: 2007-01-16
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary