Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis.
Vorobiev, S.M., Zhou, W., Seetharaman, J., Wang, D., Ma, L.C., Acton, T., Xio, R., Montelione, G.T., Tong, L., Hunt, J.F.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hypothetical protein ypjD | 119 | Bacillus subtilis | Mutation(s): 6 Gene Names: ypjD | ![]() | |
UniProt | |||||
Find proteins for P42979 (Bacillus subtilis (strain 168)) Explore P42979 Go to UniProtKB: P42979 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P42979 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NA Query on NA | E [auth A], F [auth B], G [auth C], H [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.747 | α = 90 |
b = 79.694 | β = 90 |
c = 119.568 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
ADSC | data collection |
HKL-2000 | data scaling |
SHELXD | phasing |
SHELXE | model building |