2H0L | pdb_00002h0l

Crystal Structure of a Mutant of Rat Annexin A5

PDB DOI: https://doi.org/10.2210/pdb2H0L/pdb

Classification: BLOOD CLOTTING
Organism(s): Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-05-15 Released: 2007-06-19
Deposition Author(s): Langlois D'Estaintot, B., Gallois, B., Granier, T., Tessier, B., Brisson, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.59 Å
R-Value Free:
0.278 (Depositor), 0.291 (DCC)
R-Value Work:
0.187 (Depositor), 0.198 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

Identification of the Residues Involved in the Formation of Annexin V Trimers within 2D and 3D Crystals

Brisson, A., Granier, T., Langlois D'Estaintot, B., Gallois, B., Tessier, B.

To be published.

Macromolecule Content

Total Structure Weight: 35.71 kDa
Atom Count: 2,557
Modeled Residue Count: 316
Deposited Residue Count: 318
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Annexin A5	A	318	Rattus norvegicus	Mutation(s): 6 Gene Names: Anxa5
UniProt
Find proteins for P14668 (Rattus norvegicus) Explore P14668 Go to UniProtKB: P14668
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14668
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A], D [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.59 Å
R-Value Free: 0.278 (Depositor), 0.291 (DCC)
R-Value Work: 0.187 (Depositor), 0.198 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.918	α = 90
b = 78.959	β = 90
c = 60.458	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-06-19

Deposition Author(s):

Langlois D'Estaintot, B.

Revision History (Full details and data files)

Version 1.0: 2007-06-19
Type: Initial release
Version 1.1: 2007-10-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2023-08-30
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.