2HYX

Structure of the C-terminal domain of DipZ from Mycobacterium tuberculosis

• PDB DOI: https://doi.org/10.2210/pdb2HYX/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Mycobacterium tuberculosis H37Rv
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-08-08 Released: 2007-07-17 
• Deposition Author(s): Goldstone, D., Baker, E.N., Metcalf, P., TB Structural Genomics Consortium (TBSGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.219 
• R-Value Work: 0.195 

Literature

Structure of the C-terminal domain of DipZ from Mycobacterium tuberculosis

Goldstone, D., Baker, E.N., Metcalf, P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 152.07 kDa 
• Atom Count: 10,818 
• Modelled Residue Count: 1,323 
• Deposited Residue Count: 1,408 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein dipZ	A, B, C, D	352	Mycobacterium tuberculosis H37Rv	Mutation(s): 0  Gene Names: dipZ
UniProt
Find proteins for P9WG63 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WG63  Go to UniProtKB:  P9WG63

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.219 
• R-Value Work: 0.195 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.07	α = 90
b = 117.915	β = 90
c = 123.03	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-07-17 
Deposition Author(s): Goldstone, D., Baker, E.N., Metcalf, P., TB Structural Genomics Consortium (TBSGC)

Revision History  

• Version 1.0: 2007-07-17
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Structure summary