2ILT | pdb_00002ilt

Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Sulfone Inhibitor

• PDB DOI: https://doi.org/10.2210/pdb2ILT/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-10-03 Released: 2007-04-03 
• Deposition Author(s): Longenecker, K.L., Sorensen, B., Judge, R., Qin, W., Link, J.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.275 (Depositor), 0.272 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.203 (DCC) 
• R-Value Observed: 
  0.212 (Depositor) 

Literature

Adamantane sulfone and sulfonamide 11-beta-HSD1 Inhibitors.

Sorensen, B., Winn, M., Rohde, J., Shuai, Q., Wang, J., Fung, S., Monzon, K., Chiou, W., Stolarik, D., Imade, H., Pan, L., Deng, X., Chovan, L., Longenecker, K., Judge, R., Qin, W., Brune, M., Camp, H., Frevert, E.U., Jacobson, P., Link, J.T.

(2007) Bioorg Med Chem Lett 17: 527-532

• PubMed: 17070044 
• DOI: https://doi.org/10.1016/j.bmcl.2006.10.008
• Primary Citation Related Structures: 
  2ILT


• PubMed Abstract: 
  

  Potent and selective adamantane sulfone and sulfonamide inhibitors of 11-beta-HSD-1 have been discovered. Selected compounds from these series have robust pharmacokinetic profiles and strongly inhibit liver, fat, and brain HSD1 for extended periods after oral dosing.

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Organizational Affiliation: 
• Abbott, Dept. 47F, Bldg. AP-10, Rm. 301, 100 Abbott Park Road, Abbott Park, IL 60064-6098, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Tetrahedral - T  (Explore in 3D)
Global Stoichiometry: Homo 12-mer - A12 

Biological assembly 2 generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 31.72 kDa 
• Atom Count: 2,382 
• Modeled Residue Count: 275 
• Deposited Residue Count: 275 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Corticosteroid 11-beta-dehydrogenase isozyme 1	A	275	Homo sapiens	Mutation(s): 0  Gene Names: HSD11B1 EC: 1.1.1.146 (PDB Primary Data), 1.1.1.201 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P28845 (Homo sapiens) Explore P28845  Go to UniProtKB:  P28845
PHAROS:  P28845 GTEx:  ENSG00000117594

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	D [auth A]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
NN1	E [auth A]	2-(2-CHLORO-4-FLUOROPHENOXY)-2-METHYL-N-[(1R,2S,3S,5S,7S)-5-(METHYLSULFONYL)-2-ADAMANTYL]PROPANAMIDE C21 H27 Cl F N O4 S ULLPKOZNMAWTIP-JGSHYQHOSA-N
NI	B [auth A], C [auth A]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.275 (Depositor), 0.272 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.203 (DCC) 
• R-Value Observed: 0.212 (Depositor) 

Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.871	α = 90
b = 123.871	β = 90
c = 123.871	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-04-03 
Deposition Author(s): Longenecker, K.L., Sorensen, B., Judge, R., Qin, W., Link, J.T.

Revision History  

• Version 1.0: 2007-04-03
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2024-02-21
  Changes: Data collection, Database references, Derived calculations