2JJM | pdb_00002jjm

Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558.

PDB DOI: https://doi.org/10.2210/pdb2JJM/pdb

Classification: TRANSFERASE
Organism(s): Bacillus anthracis str. Ames
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2008-04-15 Released: 2008-08-05
Deposition Author(s): Ruane, K.M., Davies, G.J., Martinez-Fleites, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.262 (Depositor), 0.267 (DCC)
R-Value Work:
0.254 (Depositor), 0.253 (DCC)
R-Value Observed:
0.254 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of a Family Gt4 Glycosyltransferase from Bacillus Anthracis Orf Ba1558.

Ruane, K.M., Davies, G.J., Martinez-Fleites, C.

(2008) Proteins 73: 784

PubMed: 18712829 Search on PubMed
DOI: https://doi.org/10.1002/prot.22171
Primary Citation Related Structures:
2JJM

Organizational Affiliation

Structural Biology Laboratory, Department of Chemistry, The University of York, YO10 5YW, United Kingdom.

Macromolecule Content

Total Structure Weight: 534.78 kDa
Atom Count: 33,924
Modeled Residue Count: 4,320
Deposited Residue Count: 4,728
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLYCOSYL TRANSFERASE, GROUP 1 FAMILY PROTEIN	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	394	Bacillus anthracis str. Ames	Mutation(s): 0 EC: 2.4.1
UniProt
Find proteins for Q81ST7 (Bacillus anthracis) Explore Q81ST7 Go to UniProtKB: Q81ST7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q81ST7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.262 (Depositor), 0.267 (DCC)
R-Value Work: 0.254 (Depositor), 0.253 (DCC)
R-Value Observed: 0.254 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.597	α = 90
b = 204.667	β = 115.49
c = 135.329	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling
SHELX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-08-05

Deposition Author(s):

Martinez-Fleites, C.

Revision History (Full details and data files)

Version 1.0: 2008-08-05
Type: Initial release
Version 1.1: 2011-05-07
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-11-08
Changes: Source and taxonomy
Version 1.4: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.