2L2W | pdb_00002l2w

Thiostrepton

• PDB DOI: https://doi.org/10.2210/pdb2L2W/pdb
• BMRB: 17153

• Classification: ANTIBIOTIC
• Organism(s): Streptomyces azureus
• Mutation(s): Yes 


• Deposited: 2010-08-27 Released: 2011-02-02 
• Deposition Author(s): Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

NMR structures of thiostrepton derivatives for characterization of the ribosomal binding site.

Jonker, H.R., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.D.

(2011) Angew Chem Int Ed Engl 50: 3308-3312

• PubMed: 21365717 
• DOI: https://doi.org/10.1002/anie.201003582
• Primary Citation Related Structures: 
  2L2W, 2L2X, 2L2Y, 2L2Z

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Organizational Affiliation: 
• Johann Wolfgang Goethe-Universität, Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Max-von-Laue-Strasse 7, 60438 Frankfurt am Main, Germany.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 1.81 kDa 
• Atom Count: 114 
• Modeled Residue Count: 19 
• Deposited Residue Count: 19 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiostrepton	A	19	Streptomyces azureus	Mutation(s): 1
UniProt
Find proteins for P0C8P8 (Streptomyces azureus) Explore P0C8P8  Go to UniProtKB:  P0C8P8

Small Molecules

Modified Residues  4 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
DHA	A	SER	Dehydroamino acid	C3 H5 N O2
DBU	A	THR	Dehydroamino acid	C4 H7 N O2
TS9	A	ILE	Hydroxylation	C6 H13 N O4
MH6	A	SER	Dehydrogenation	C3 H5 N O3

Non-standard Monomers  2 Unique
ID	Chains	Type	Formula	2D Diagram
BB9	A	PEPTIDE LINKING	C3 H5 N O2 S
DCY	A	D-PEPTIDE LINKING	C3 H7 N O2 S

Biologically Interesting Molecules (External Reference) 

1 Unique

Entity ID: 1
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_000223	A	THIOSTREPTON	Thiopeptide / Antibiotic

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-02-02 
Deposition Author(s): Jonker, H.R.A., Baumann, S., Wolf, A., Schoof, S., Hiller, F., Schulte, K.W., Kirschner, K.N., Schwalbe, H., Arndt, H.-D.

Revision History  

• Version 1.0: 2011-02-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-12-12
  Changes: Other
• Version 1.3: 2013-05-08
  Changes: Derived calculations
• Version 2.0: 2025-03-26
  Changes: Data collection, Database references, Derived calculations, Polymer sequence, Structure summary