2NP5

Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.219 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 
    0.179 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted LMTClick on this verticalbar to view detailsBest fitted NDSClick on this verticalbar to view details

This is version 1.5 of the entry. See complete history


Literature

Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.

Chruszcz, M.Evdokimova, E.Kagan, O.Cymborowski, M.Savchenko, A.Edwards, A.Minor, W.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional regulator
A, B, C, D
203Rhodococcus jostii RHA1Mutation(s): 4 
Gene Names: RHA1_ro04179
UniProt
Find proteins for Q0S914 (Rhodococcus jostii (strain RHA1))
Explore Q0S914 
Go to UniProtKB:  Q0S914
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0S914
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.219 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 0.179 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.721α = 102.31
b = 52.23β = 107.25
c = 72.853γ = 89.71
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
Cootmodel building
CCP4phasing
Omodel building
ARP/wARPmodel building

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted LMTClick on this verticalbar to view detailsBest fitted NDSClick on this verticalbar to view details

Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2006-11-28
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.4: 2023-12-27
    Changes: Data collection
  • Version 1.5: 2024-10-30
    Changes: Structure summary