2QLC | pdb_00002qlc

The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS

PDB DOI: https://doi.org/10.2210/pdb2QLC/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Chlorobaculum tepidum TLS
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2007-07-12 Released: 2007-09-04
Deposition Author(s): Zhang, R., Duggan, E., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.274 (Depositor), 0.281 (DCC)
R-Value Work:
0.216 (Depositor), 0.221 (DCC)
R-Value Observed:
0.219 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS.

Zhang, R., Duggan, E., Clancy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 114.38 kDa
Atom Count: 8,181
Modeled Residue Count: 995
Deposited Residue Count: 1,008
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA repair protein radC homolog	A, B, C, D, E A, B, C, D, E, F, G, H	126	Chlorobaculum tepidum TLS	Mutation(s): 0 Gene Names: radC, CT0611
UniProt
Find proteins for Q8KES1 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q8KES1 Go to UniProtKB: Q8KES1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8KES1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.274 (Depositor), 0.281 (DCC)
R-Value Work: 0.216 (Depositor), 0.221 (DCC)
R-Value Observed: 0.219 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.434	α = 90
b = 95.959	β = 90
c = 192.32	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MLPHARE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-09-04

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-09-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.