2Y0L

Crystal Structure of Pseudomonas Aeruginosa OpdO

• PDB DOI: https://doi.org/10.2210/pdb2Y0L/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Pseudomonas aeruginosa PAO1
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2010-12-03 Released: 2011-12-21 
• Deposition Author(s): Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.59 Å
• R-Value Free: 
  0.287 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Pseudomonas Aeruginosa Opdo

Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 44.43 kDa 
• Atom Count: 2,965 
• Modelled Residue Count: 362 
• Deposited Residue Count: 402 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CIS-ACONITATE PORIN OPDH	A	402	Pseudomonas aeruginosa PAO1	Mutation(s): 0
UniProt
Find proteins for Q9I5H4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I5H4  Go to UniProtKB:  Q9I5H4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.59 Å
• R-Value Free:  0.287 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.106	α = 90
b = 123.989	β = 90
c = 114.349	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-12-21 
Deposition Author(s): Touw, D.S., Vijayaraghavan, J., Vandenberg, B.

Revision History  

• Version 1.0: 2011-12-21
  Type: Initial release
  
• Version 1.1: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description