Crystal structure of D-Alanine:D-Alanine Ligase with ADP from Thermus thermophius HB8
Kitamura, Y., Yokoyama, S., Kuramitsu, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
D-alanine--D-alanine ligase | 319 | Thermus thermophilus | Mutation(s): 0  EC: 6.3.2.4 | ||
UniProt | |||||
Find proteins for Q5SHZ3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHZ3  Go to UniProtKB:  Q5SHZ3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SHZ3 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | E [auth A], F [auth B], H [auth C], J [auth D] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
MG Query on MG | G [auth C], I [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.104 | α = 90 |
b = 101.068 | β = 90 |
c = 197.542 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
BSS | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |