Crystal structure of D-Alanine:D-Alanine Ligase with ADP and D-Alanine from Thermus thermophius HB8
Kitamura, Y., Yokoyama, S., Kuramitsu, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-alanine--D-alanine ligase | 319 | Thermus thermophilus | Mutation(s): 0  EC: 6.3.2.4 | ||
UniProt | |||||
Find proteins for Q5SHZ3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHZ3  Go to UniProtKB:  Q5SHZ3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SHZ3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | G [auth A], K [auth B], N [auth C], P [auth D] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
DAL Query on DAL | H [auth A], Q [auth D] | D-ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-UWTATZPHSA-N | |||
MG Query on MG | E [auth A] F [auth A] I [auth B] J [auth B] L [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 68.946 | α = 90 |
b = 105.394 | β = 90 |
c = 199.748 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
BSS | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |